Wykłady i seminaria
2023
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28 września 2023
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Leadership in Research. A Diversity Perspective.
- Dr Sandra Tenreiro, Nova Lisboa Medical School, Lisbon, Portugal
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
Leadership in Research. A Diversity Perspective.
- Data: 28 września 2023, 16:30
- Prelegent: Dr Sandra Tenreiro, Nova Lisboa Medical School, Lisbon, Portugal
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Retinal vascular diseases are a leading cause of blindness. Optical coherence tomography (OCT) has become the standard imaging modality in clinic. OCT angiography (OCTA) has been rapidly adopted in research and clinical settings. In this talk, the development of OCTA techniques for clinical use will be introduced, the application of artificial intelligence in OCTA will be reviewed, and high-performance OCTA prototypes will be discussed. OCT oximetry is new type of functional OCT, which has recently been achieved by visible-light OCT and used in preclinical and clinical research. Altered retinal vascular oxygenation measured by OCT may benefit the research on ocular vascular biology and physiology and influence clinical diagnosis or management of retinal diseases. In this talk, the development of OCT oximetry on retinal capillaries and its applications on rodent models will be presented. At the end, the future directions of OCT angiography and oximetry will be discussed.
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22 września 2023
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Separation of Carbon Nanotubes through Host-Guest Chemistry
- Prof. Naoki Komatsu, Kyoto University
- Dream Chemistry Lecture: Mentors, in-person at IChF Aula
- Zobacz więcej
Separation of Carbon Nanotubes through Host-Guest Chemistry
- Data: 22 września 2023, 13:00
- Prelegent: Prof. Naoki Komatsu, Kyoto University
- Instytucja: Dream Chemistry Lecture: Mentors, in-person at IChF Aula
- Miejsce:
in-person at IChF Aula
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21 września 2023
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Full-Field OCT for cellular-resolution retinal imaging over a wide field-of-view: clinical application and new developments
- Dr Pedro Mecê, Institut Langevin, CNRS, Paris, and Quinze-Vingts National Ophthalmology Hospital in Paris, France
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
Full-Field OCT for cellular-resolution retinal imaging over a wide field-of-view: clinical application and new developments
- Data: 21 września 2023, 16:30
- Prelegent: Dr Pedro Mecê, Institut Langevin, CNRS, Paris, and Quinze-Vingts National Ophthalmology Hospital in Paris, France
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
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14 września 2023
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Electrochemistry Hub at SOLARIS
- Dr Anna Wach, National Synchrotron Radiation Centre SOLARIS
- IChF Seminar, in-person at IChF Aula (Zoom stream provided)
- Zobacz więcej
Electrochemistry Hub at SOLARIS
- Data: 14 września 2023, 10:00
- Prelegent: Dr Anna Wach, National Synchrotron Radiation Centre SOLARIS
- Instytucja: IChF Seminar, in-person at IChF Aula (Zoom stream provided)
- Miejsce:
In-person at IChF Aula
Zoom link
Meeting ID: 938 3782 2566
Passcode: 418647
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7 września 2023
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Effective Kirchhoff’s Laws for Electric-Double-Layer Charging in Porous Media
- Dr Ankur Gupta, University of Colorado, Boulder
- Dream Chemistry Lecture, in-person at IChF Aula
- Zobacz więcej
Effective Kirchhoff’s Laws for Electric-Double-Layer Charging in Porous Media
- Data: 7 września 2023, 10:00
- Prelegent: Dr Ankur Gupta, University of Colorado, Boulder
- Instytucja: Dream Chemistry Lecture, in-person at IChF Aula
- Miejsce:
in-person at IChF Aula
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7 lipca 2023
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AUTOMATED REACTION DISCOVERY USING MD SIMULATIONS
- Prof. Emilio Martínez-Núñez, Department of Physical Chemistry, University of Santiago de Compostela, Spain
- Zobacz więcej
AUTOMATED REACTION DISCOVERY USING MD SIMULATIONS
- Data: 7 lipca 2023, 10:00
- Prelegent: Prof. Emilio Martínez-Núñez, Department of Physical Chemistry, University of Santiago de Compostela, Spain
- Miejsce:
Aula (in-person seminar)
- Abstrakt:
A computational protocol is proposed in this talk for use in discovering reaction mechanisms. The method does not rely on either chemical intuition or assumed a priori mechanisms, working in a fully automated fashion.
The pipeline consists of three steps:
1. Exploration of reaction mechanisms through Molecular Dynamics simulations or chemical knowledge-based algorithms.
2. Use of Graph Theory to build the reaction network.
3. Kinetics simulations.
The method has been successfully employed to study combustion chemistry, cycloaddition reactions, photodissociations, organometallic catalysis, radiation damage of biological systems, simulation of mass spectrometry experiments, and astrochemistry, and a few examples will be given in this talk.
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23 czerwca 2023
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Topic: Does it also work in theory?
- Discussion leader: Dr. Jeffrey Everts (Team 10)
- Coffee seminar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: Does it also work in theory?
Coffee seminar
- Data: 23 czerwca 2023, 13:13
- Prelegent: Discussion leader: Dr. Jeffrey Everts (Team 10)
- Instytucja: Coffee seminar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee seminar IN-PERSON at IChF Conference Room
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21 czerwca 2023
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The dynamic structure of loose proton-bonded systems and the associated vibrational spectroscopic signatures.
- Prof. Bruno Martínez-Haya, Center for Nanoscience and Sustainable Technologies, Universidad Pablo de Olavide, Seville, Spain
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
The dynamic structure of loose proton-bonded systems and the associated vibrational spectroscopic signatures.
- Data: 21 czerwca 2023, 10:00
- Prelegent: Prof. Bruno Martínez-Haya, Center for Nanoscience and Sustainable Technologies, Universidad Pablo de Olavide, Seville, Spain
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 995 5027 3688
Passcode: 471874
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19 czerwca 2023
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Enabling Open Science with MATLAB: from open data to reproducible workflows
- Shubo Chakrabarti, MathWorks
- Conference room IChF
- Zobacz więcej
Enabling Open Science with MATLAB: from open data to reproducible workflows
- Data: 19 czerwca 2023, 10:00-12:00 a.m. (Monday)
- Prelegent: Shubo Chakrabarti, MathWorks
- Instytucja: Conference room IChF
- Miejsce:
In-person seminar. Conference room IChF.
- Osoba kontaktowa:
Patrycja Nitoń
- Abstrakt:
The seminar will focus on some examples of how MATLAB users contribute to and leverage Open Science in these 4 aspects:
- Enabling access to open data – with examples ranging from data on the AWS Open Registry to several open data repositories used by researchers across disciplines.
- Enabling open infrastructure – with the new MATLAB kernel for Jupyter and MATLAB Parallel Programming tools on several national infrastructures.
- Enabling reproducible workflows – with accessible MATLAB workflows on reproducibility portals and runnable MATLAB code on GitHub.
- Enabling the community – with support for tool-builders and open-source community projects.
The seminar is organised in the framework of the PD2PI project.
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14 czerwca 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 14 czerwca 2023, from 2 PM to approx. 3:00 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Vishnu Anilkumar, M. Sc.
‘Probing the structure-property relationships in single-crystalline lead halide perovskites for photodetector applications’
Behdokht Hashemi Hosseini, M. Sc.
‘An Introduction to Nanoengineering of Multicomponent Metal-Free Carbonaceous Materials for Bio-Oil Upgrading through Ultrasound-Assisted Selective Redox Photocatalysis in Continuous-Flow Reactors’
This session will be chaired jointly by the PhD students A. Krześniak, M. Czarnota, and T. Bednarek.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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14 czerwca 2023
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Spectroscopy of single organic dye molecules. Electric field effect.
- Prof. Bolesław Kozankiewicz, Institute of Physics PAS in Warsaw
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Spectroscopy of single organic dye molecules. Electric field effect.
- Data: 14 czerwca 2023, 10:00
- Prelegent: Prof. Bolesław Kozankiewicz, Institute of Physics PAS in Warsaw
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 984 1343 9015
Passcode: 288041
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6 czerwca 2023
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"Breaking barriers - physical chemistry in biological systems" ONLINE
- Prof. Maciej Wojtkowski, IChF & ICTER
- Zobacz więcej
"Breaking barriers - physical chemistry in biological systems" ONLINE
- Data: 6 czerwca 2023, 11:00
- Prelegent: Prof. Maciej Wojtkowski, IChF & ICTER
- Miejsce:
Zoom link
Meeting ID: 986 8805 0976
Passcode: 274167
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2 czerwca 2023
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Topic: Scientific Mobility: Ions, Air, Water, Ice
- Discussion leader: Dr. Thomas Custer (Team 25)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: Scientific Mobility: Ions, Air, Water, Ice
Coffee semiar
- Data: 2 czerwca 2023, 13:13
- Prelegent: Discussion leader: Dr. Thomas Custer (Team 25)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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31 maja 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 31 maja 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Marek Czarnota, M. Sc.
‘Speeding up restricted diffusion NMR measurements for porous structure determination of biocompatible gels’
Tomasz Bednarek, M. Sc.
‘Analytical 3D picture of the arbitrary metal surface response to a molecular adsorbate’
Elżbieta Jarosińska, M. Sc.
‘Cell culture monitoring with electrochemical sensors’
This session will be chaired jointly by the PhD students Wiktor Kulesza, Amit Kumar Patel, and Anna Galińska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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30 maja 2023
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"Breaking barriers - physical chemistry in biological systems" ONLINE
- Prof. Alex Evilevitch, Lund University
- Zobacz więcej
"Breaking barriers - physical chemistry in biological systems" ONLINE
- Data: 30 maja 2023, 11:00
- Prelegent: Prof. Alex Evilevitch, Lund University
- Miejsce:
Zoom link
Meeting ID: 987 1478 8533
Passcode: 710475
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30 maja 2023
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"Breaking barriers - physical chemistry in biological systems" ONLINE
- Prof. Vincent Rotello, University of Massachusetts Amherst
- Zobacz więcej
"Breaking barriers - physical chemistry in biological systems" ONLINE
- Data: 30 maja 2023, 16:00
- Prelegent: Prof. Vincent Rotello, University of Massachusetts Amherst
- Miejsce:
Zoom link
Meeting ID: 977 9052 2185
Passcode: 657023
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26 maja 2023
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Topic: The non-scientific perspective of science - how to manage research group?
- Discussion leader: Patrycja Kuźma
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: The non-scientific perspective of science - how to manage research group?
Coffee semiar
- Data: 26 maja 2023, 13:13
- Prelegent: Discussion leader: Patrycja Kuźma
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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25 maja 2023
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Deep learning ocular OCT image analysis: lessons learned and future directions
- David Alonso Caneiro , PhD He is a Senior Lecturer at the School of Science, Technology, and Engineering at the University of the Sunshine Coast
- The International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Deep learning ocular OCT image analysis: lessons learned and future directions
- Data: 25 maja 2023, 11:00 (UTC+2)
- Prelegent: David Alonso Caneiro , PhD He is a Senior Lecturer at the School of Science, Technology, and Engineering at the University of the Sunshine Coast
- Instytucja: The International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM linkMeeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Optical coherence tomography has revolutionized ocular imaging, transforming the way ocular tissue can be imaged in an in vivo manner. In a similar manner, deep learning has emerged as a powerful tool disrupting the field of medical image analysis.
Lessons learned from applying deep learning techniques to ocular OCT image analysis will be covered, exploring the challenges encountered during the development and implementation of deep learning models for OCT images, including the need for large annotated datasets, model selection, and generalizability across different patient populations and imaging devices.
A number of exciting future directions in deep learning-based OCT image analysis will be highlighted, such as generative adversarial networks, that hold promise for improving the accuracy and efficiency of disease detection, segmentation, and classification tasks.
This overview of deep learning techniques should allow for a better understanding of the potential and future that these techniques can have to inform the decision-making of clinicians and researchers, and more importantly, improve patient care.
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24 maja 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 24 maja 2023, from 2 PM to approx. 3:00 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Wiktor Kulesza, M. Sc.
‘Hemodynamics monitoring in mouse retinal vessels via ultrafast volumetric Spatio-Temporal Optical Coherence Tomography (STOC-T) imaging’
Amit Kumar Patel, M. Sc.
‘Assembly of 1D particle chains using dielectrophoretic and capillary forces’
This session will be chaired jointly by the PhD students Lucyna Piórkowska and Milena Mućka.
Everybody is most welcome to attend (the Thesis Supervisors in particular!).
- Zobacz więcej
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23 maja 2023
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Breaking barriers - physical chemistry in biological systems - seminar 3
- Prof. Petra Schwille, Max-Planck-Institute of Biochemistry
- ONLINE
- Zobacz więcej
Breaking barriers - physical chemistry in biological systems - seminar 3
- Data: 23 maja 2023, 12:00
- Prelegent: Prof. Petra Schwille, Max-Planck-Institute of Biochemistry
- Instytucja: ONLINE
- Miejsce:
Zoom link
Meeting ID: 940 1214 7328
Passcode: 893538
- Osoba kontaktowa:
Patrycja Nitoń
- Abstrakt:
Dear All,
You are invited to join an enlightening scientific online seminar cycle on "Breaking barriers - physical chemistry in biological systems". Discover the latest advancements in the field and gain new insights into the interface of physical chemistry and biology. Don't miss out on this opportunity to network with leading researchers and expand your knowledge in this fascinating area of study. The series is organised in the framework of the PD2PI project.
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18 maja 2023
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OCT Angiography and Oximetry: Prospects & Challenges
- Prof. Yali Jia, Oregon Health & Science University, USA
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
OCT Angiography and Oximetry: Prospects & Challenges
- Data: 18 maja 2023, 16:30
- Prelegent: Prof. Yali Jia, Oregon Health & Science University, USA
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Retinal vascular diseases are a leading cause of blindness. Optical coherence tomography (OCT) has become the standard imaging modality in clinic. OCT angiography (OCTA) has been rapidly adopted in research and clinical settings. In this talk, the development of OCTA techniques for clinical use will be introduced, the application of artificial intelligence in OCTA will be reviewed, and high-performance OCTA prototypes will be discussed. OCT oximetry is new type of functional OCT, which has recently been achieved by visible-light OCT and used in preclinical and clinical research. Altered retinal vascular oxygenation measured by OCT may benefit the research on ocular vascular biology and physiology and influence clinical diagnosis or management of retinal diseases. In this talk, the development of OCT oximetry on retinal capillaries and its applications on rodent models will be presented. At the end, the future directions of OCT angiography and oximetry will be discussed.
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17 maja 2023
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Graphene and DNA origami nanostructures in single-molecule microscopy – how to build an ultra-sensitive biosensor?
- Karolina Zielonka, IChF Team 29 Photophysics and spectroscopy of photoactive systems
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Graphene and DNA origami nanostructures in single-molecule microscopy – how to build an ultra-sensitive biosensor?
- Data: 17 maja 2023, 10:00
- Prelegent: Karolina Zielonka, IChF Team 29 Photophysics and spectroscopy of photoactive systems
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 970 9047 6987
Passcode: 501720
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17 maja 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 17 maja 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Lucyna Piórkowska, M. Sc.
‘Development of a new strategy for changing the tropism of rabies virus’
Milena Mućka, M. Sc.
‘Retinal signal transduction cascade modulation using TRPM5 protein’
Anna Galińska, M. Sc.
‘Creation of viral plasmids for enhancement of the signal transduction in treated retina’
This session will be chaired jointly by the PhD students Yaroslava Oliinyk, Katarzyna Ulewicz, and Klaudia Nowacka.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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16 maja 2023
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Breaking barriers - physical chemistry in biological systems - seminar 2
- Prof. Lee Cronin, University of Glasgow
- ONLINE
- Zobacz więcej
Breaking barriers - physical chemistry in biological systems - seminar 2
- Data: 16 maja 2023, 11:00
- Prelegent: Prof. Lee Cronin, University of Glasgow
- Instytucja: ONLINE
- Miejsce:
Zoom link
Meeting ID: 999 7931 6446
Passcode: 267046
- Osoba kontaktowa:
Patrycja Nitoń
- Abstrakt:
Dear All,
You are invited to join an enlightening scientific online seminar cycle on "Breaking barriers - physical chemistry in biological systems". Discover the latest advancements in the field and gain new insights into the interface of physical chemistry and biology. Don't miss out on this opportunity to network with leading researchers and expand your knowledge in this fascinating area of study. The series is organised in the framework of the PD2PI project.
Lee Cronin and his team are trying to make artificial life forms, find alien life, explore the digitization of chemistry, understand how information can be encoded into chemicals and construct chemical computers.
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12 maja 2023
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SOLARIS National Synchrotron Radiation Centre: the infrastructure for research
- dr hab. Jakub Szlachetko, prof. UJ, Director of SOLARIS National Synchrotron Radiation Centre
- Institute's Seminar at IChF Aula
- Zobacz więcej
SOLARIS National Synchrotron Radiation Centre: the infrastructure for research
- Data: 12 maja 2023, 12:00
- Prelegent: dr hab. Jakub Szlachetko, prof. UJ, Director of SOLARIS National Synchrotron Radiation Centre
- Instytucja: Institute's Seminar at IChF Aula
- Miejsce:
Institute's Seminar at IChF Aula
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11 maja 2023
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Computational phase microscopy: experimental and numerical ways to increase the signal-to-noise ratio
- Dr hab. inż. Maciej Trusiak, Associate Professor in Institute of Micromechanics and Photonics Warsaw University of Technology
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
Computational phase microscopy: experimental and numerical ways to increase the signal-to-noise ratio
- Data: 11 maja 2023, 17:30 (UTC+1)
- Prelegent: Dr hab. inż. Maciej Trusiak, Associate Professor in Institute of Micromechanics and Photonics Warsaw University of Technology
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Optical microscopy plays a key role in the development of biology and biomedicine by enabling cell and tissue examination. Fluorescence techniques, although very capable, are based on time-consuming labeling and introduce the risk of photochemical stress and phototoxicity. Phase microscopy non-invasively uses an endogenous contrast agent in the form of a phase delay introduced locally by biological samples. Owing to their unique properties, phase microscopy methods open the possibility of studying live cell colonies. Well-established Zernike and Nomarski setups enable the qualitative examination of transparent cells with only a slight, yet pivotal, inOptical microscopy plays a key role in the development of biology and biomedicine by enabling cell and tissue examination. Fluorescence techniques, although very capable, are based on time-consuming labeling and introduce the risk of photochemical stress and phototoxicity. Phase microscopy non-invasively uses an endogenous contrast agent in the form of a phase delay introduced locally by biological samples. Owing to their unique properties, phase microscopy methods open the possibility of studying live cell colonies. Well-established Zernike and Nomarski setups enable the qualitative examination of transparent cells with only a slight, yet pivotal, increase in contrast. Quantitative phase imaging (QPI) has emerged to empower precise diagnostics and high-contrast imaging with very low background level. Numerical reconstruction plays a key role in QPI, however, which is not the case in fluorescence imaging or classical phase microscopy. I discuss three representative techniques of QPI microscopy and the basics of how their reconstruction algorithms work: (1) digital holographic microscopy (mainly using coherent illumination), (2) Fourier ptychographic microscopy (using mainly non-coherent radiation), and (3) lensless holographic microscopy (using partially coherent light). A summary of the advantages and disadvantages of the selected quantitative phase microscopy methods presented will provide an outline of the potential development paths in the pursuit of hybrid (experimental and numerical) signal-to-noise ratio improvement in a high-speed fashion.crease in contrast. Quantitative phase imaging (QPI) has emerged to empower precise diagnostics and high-contrast imaging with very low background level. Numerical reconstruction plays a key role in QPI, however, which is not the case in fluorescence imaging or classical phase microscopy. I discuss three representative techniques of QPI microscopy and the basics of how their reconstruction algorithms work: (1) digital holographic microscopy (mainly using coherent illumination), (2) Fourier ptychographic microscopy (using mainly non-coherent radiation), and (3) lensless holographic microscopy (using partially coherent light). A summary of the advantages and disadvantages of the selected quantitative phase microscopy methods presented will provide an outline of the potential development paths in the pursuit of hybrid (experimental and numerical) signal-to-noise ratio improvement in a high-speed fashion.
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10 maja 2023
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Photochemical Hydrogen Storage with Hexaazatrinaphthylene. Advantages and disadvantages
- Dr Olaf Morawski, Institute of Physics PAS, Warsaw, PL
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Photochemical Hydrogen Storage with Hexaazatrinaphthylene. Advantages and disadvantages
- Data: 10 maja 2023, 10:00
- Prelegent: Dr Olaf Morawski, Institute of Physics PAS, Warsaw, PL
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 998 1714 3167
Passcode: 763697
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10 maja 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 10 maja 2023, from 2 PM to approx. 2:30 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Klaudia Nowacka, M. Sc.
‘Application of dynamic light scatterers for improving resolution in OCT imaging’
This session will be chaired by the PhD student Huma Jamil.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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9 maja 2023
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Breaking barriers - physical chemistry in biological systems - seminar 1
- Prof. Rienk Eelkema, Delft University of Technology
- ONLINE
- Zobacz więcej
Breaking barriers - physical chemistry in biological systems - seminar 1
- Data: 9 maja 2023, 13:00
- Prelegent: Prof. Rienk Eelkema, Delft University of Technology
- Instytucja: ONLINE
- Miejsce:
Zoom link
Meeting ID: 937 3620 2840
Passcode: 133835
- Osoba kontaktowa:
Patrycja Nitoń
- Abstrakt:
Dear All,
You are invited to join an enlightening scientific online seminar cycle on "Breaking barriers - physical chemistry in biological systems". Discover the latest advancements in the field and gain new insights into the interface of physical chemistry and biology. Don't miss out on this opportunity to network with leading researchers and expand your knowledge in this fascinating area of study. The series is organised in the framework of the PD2PI project.
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28 kwietnia 2023
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Topic: Leave Fourier out of NMR. The beauty of non-conventional NMR dimensions.
- Discussion leader: Dr. Mateusz Urbańczyk (group 30)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: Leave Fourier out of NMR. The beauty of non-conventional NMR dimensions.
Coffee semiar
- Data: 28 kwietnia 2023, 1:00 PM
- Prelegent: Discussion leader: Dr. Mateusz Urbańczyk (group 30)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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27 kwietnia 2023
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Cell-IN reagent as a method for macromolecules delivery into mammalian cells
- Aneta Karpińska and dr Karina Kwapiszewska, Cell-IN commercial initiative of the IChF
- PD2PI Seminar - Business initiatives at IChF Aula
- Zobacz więcej
Cell-IN reagent as a method for macromolecules delivery into mammalian cells
- Data: 27 kwietnia 2023, 10:00
- Prelegent: Aneta Karpińska and dr Karina Kwapiszewska, Cell-IN commercial initiative of the IChF
- Instytucja: PD2PI Seminar - Business initiatives at IChF Aula
- Miejsce:
IChF Aula
- Abstrakt:
Crossing the cell membrane barrier is a critical step in many biochemical and biomedical studies. The great majority of these involve the use of biomacromolecules that are not spontaneously taken up by the cell due to the selective permeability of the cell membrane. Thus, an efficient method for delivering a desired compound into cells is required. A novel method was developed in the Institute of Physical Chemistry PAS: Cell-IN is a reagent that allows the introduction of different types of molecules inside mammalian cells quickly and simply without needing specific equipment. Cell-IN works by disintegrating intracellular vesicles under osmotic shock. During disintegration, cargo closed inside the vesicles is released into the cell. Cell-IN has been validated for a wide range of compounds (dyes, polymers, proteins, nucleic acids, nanoparticles) as well as cell types (normal, cancer, epithelial, mesenchymal cells).
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26 kwietnia 2023
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Hund's Rule Violating Molecules as Precursors of New Optoelectronic Materials
- Prof. dr hab. Andrzej Sobolewski, Institute of Physics PAS, Warsaw
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Hund's Rule Violating Molecules as Precursors of New Optoelectronic Materials
- Data: 26 kwietnia 2023, 10:00
- Prelegent: Prof. dr hab. Andrzej Sobolewski, Institute of Physics PAS, Warsaw
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 998 1714 3167
Passcode: 763697
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26 kwietnia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 26 kwietnia 2023, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Yaroslava Oliinyk, M. Sc. & Katarzyna Ulewicz, M. Sc.
‘Nanoplastics in living cells’
This session will be chaired by the PhD student Uladzislau Sakalouski.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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21 kwietnia 2023
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Topic: Can management tools (5S and Kanban Board System) be useful for a scientist?
- Discussion leader: dr Dominika Ogończyk (Team 11 Microfluidics and Complex Fluids Research Group)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: Can management tools (5S and Kanban Board System) be useful for a scientist?
Coffee semiar
- Data: 21 kwietnia 2023, 1:00 PM
- Prelegent: Discussion leader: dr Dominika Ogończyk (Team 11 Microfluidics and Complex Fluids Research Group)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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20 kwietnia 2023
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Conformational Switching and Membrane Insertion of Proteins
- Dr Alexey S. Ladokhin, The University of Kansas Medical Center, Kansas City, KS U.S.A. Institute of Biochemistry, Kyiv, Ukraine.
- Zobacz więcej
Conformational Switching and Membrane Insertion of Proteins
- Data: 20 kwietnia 2023, 17:30 (UTC+2)
- Instytucja: Dr Alexey S. Ladokhin, The University of Kansas Medical Center, Kansas City, KS U.S.A. Institute of Biochemistry, Kyiv, Ukraine.
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Every tissue, cell, and organelle has specific electrochemical properties resulting from differences in concentrations of protons, small ions, and charged macromolecules. Delivering proteins to these different environments can trigger functionally relevant structural rearrangements, which we refer to as conformational switching. A notable example is the transition of specific soluble proteins into lipid membranes. This phenomenon is prominent in many physiological and pathogenic processes, including the regulation of apoptosis by the Bcl-2 family of proteins, critical for cancer treatment. Our ability to target or manipulate these processes can be beneficial for human health. For example, membrane insertion of the pH Low Insertion Peptide (pHLIP) has recently been used to target drugs to cancer cells. While these processes are of fundamental biomedical importance, basic knowledge of the mechanism of conformational switching is often lacking, impeding our ability to predict protein-lipid interactions under physiological conditions. Here we present our progress applying various experimental and computational approaches in deciphering complex interactions on membrane interfaces and establishing the role of lipid composition and divalent cations (i.e, Ca2+ and Mg2+) in modulating important physiological processes.
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20 kwietnia 2023
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Maternity/Paternity vs scientific career
- GEP debate
- IChF Aula
- Zobacz więcej
Maternity/Paternity vs scientific career
- Data: 20 kwietnia 2023, 10:00
- Prelegent: GEP debate
- Instytucja: IChF Aula
- Miejsce:
IChF Aula
Coffee and snacks provided!
Please show your interest by filling an online form so that organizers can estimate number of participants.
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19 kwietnia 2023
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Liquid-crystal templated chiral nanomaterials - towards thin films with enhanced chiroptical properties
- Prof. dr hab. Wiktor Lewandowski, Department of Chemistry, University of Warsaw
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Liquid-crystal templated chiral nanomaterials - towards thin films with enhanced chiroptical properties
- Data: 19 kwietnia 2023, 10:00
- Prelegent: Prof. dr hab. Wiktor Lewandowski, Department of Chemistry, University of Warsaw
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 996 6211 3224
Passcode: 751449
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19 kwietnia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 19 kwietnia 2023, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar will be held in the IPC PAS Auditorium on Wednesday.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Uladzislau Sakalouski, M. Sc.
‘Polymer Diffusion in Complex Fluids: Brownian Dynamics Simulations and Algorithm Selection'
Huma Jamil, M. Sc.
‘Diffusion of nano-rods and soft polymer in complex liquids’
This session will be chaired jointly by the PhD students Katarzyna Dusiło and Abhishek Viswanath.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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14 kwietnia 2023
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Topic: Recent advances in real-time dynamics of ultrafast fiber lasers
- Discussion leader: dr eng. Katarzyna Krupa (Team 27 Laser Centre)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: Recent advances in real-time dynamics of ultrafast fiber lasers
Coffee semiar
- Data: 14 kwietnia 2023, 1:00 PM
- Prelegent: Discussion leader: dr eng. Katarzyna Krupa (Team 27 Laser Centre)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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12 kwietnia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 12 kwietnia 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
In-person at IChF Aula.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Katarzyna Dusiło, M. Sc.
‘Voltammetric studies of decamethylferrocene in ionic liquid based microemulsion'
Abhishek Viswanath, M. Sc.
‘Fabrication of synthetic polymer foams for energy absorption’
Adam Trzaska, M. Sc.
‘Mechanochemical approach for synthesis of cyclodextrin-derived metal-organic frameworks’
This session will be chaired jointly by the PhD students Andrzej Krześniak and Wojciech Mazurkiewicz.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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5 kwietnia 2023
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Single- and multilayer graphene: Influence of the number of layers on the interaction with single dye molecules
- Karolina Zielonka, Team 29 Photophysics and spectroscopy of photoactive systems
- Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Zobacz więcej
Single- and multilayer graphene: Influence of the number of layers on the interaction with single dye molecules
- Data: 5 kwietnia 2023, 10:00
- Prelegent: Karolina Zielonka, Team 29 Photophysics and spectroscopy of photoactive systems
- Instytucja: Seminar of the Photochemistry and Spectroscopy Department ONLINE
- Miejsce:
Zoom link
Meeting ID: 998 4457 3587
Passcode: 246000
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31 marca 2023
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Topic: journal article Friedel Oscillations Induced by Magnetic Skyrmions: From Scattering Properties to All-Electrical Detection
- Discussion leader: dr Aleksandra Siklitckaia (Team 20 Cooperative Catalysis)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: journal article Friedel Oscillations Induced by Magnetic Skyrmions: From Scattering Properties to All-Electrical Detection
Coffee semiar
- Data: 31 marca 2023, 1:00 PM
- Prelegent: Discussion leader: dr Aleksandra Siklitckaia (Team 20 Cooperative Catalysis)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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30 marca 2023
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Quantum-chemical perspective on the properties and origins of RNA and DNA
- Dr Rafał Szabla, Department of Physical and Quantum Chemistry, Wroclaw University of Science and Technology, Poland
- Zobacz więcej
Quantum-chemical perspective on the properties and origins of RNA and DNA
- Data: 30 marca 2023, 10:00 am
- Prelegent: Dr Rafał Szabla, Department of Physical and Quantum Chemistry, Wroclaw University of Science and Technology, Poland
- Miejsce:
Thursday, the 30th of March, 10:00 am, Aula (in-person seminar)
- Abstrakt:
The question about the uniqueness of RNA and DNA and the reasons for their selection as the only informational polymers in biology is one of the most fascinating problems for contemporary science. Despite years of experimental efforts, the first selective pathways to RNA/DNA nucleotides under prebiotic conditions were shown only recently [1,2]. However, it is still unclear why nature selected only a limited set of nucleobases and (deoxy)ribose as the primary components of nucleic acids and how these informational polymers could have undergone self-replication. In this talk, I will demonstrate how modern methods of computational chemistry can be used to explain the origins of RNA and DNA on Earth and guide futher experimental efforts. In particular, I will show how chemical selectivity could be shaped by UV irradiation in early prebiotic environments. I will also demonstrate how quantum chemical simulations can be used to enhance charge transfer through the DNA double helix with simple modifications of nucleobases [3,4].
[1] Xu, J. et al. Nat. Chem. 9, 303–309 (2017).
[2] Xu, J. et al. Nature 582, 60–66 (2020).
[3] Szabla, R. et al. Chem. Sci. 9, 3131–3140 (2018).
[4] Szabla, R. et al. Nat. Commun. 12, 3018 (2021).
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
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30 marca 2023
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Digital manufacturing in biomedical research: a step towards engineering functional tissue and organ replicas in vitro
- Marco Costantini, PhD Dr. Costantini is a researcher at the Institute of Physical Chemistry, Polish Academy of Sciences. He holds a Master’s degree in industrial chemistry and a PhD in chemical and processing engineering, both from La Sapienza University
- The International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Digital manufacturing in biomedical research: a step towards engineering functional tissue and organ replicas in vitro
- Data: 30 marca 2023, 16:30 (UTC+2)
- Prelegent: Marco Costantini, PhD Dr. Costantini is a researcher at the Institute of Physical Chemistry, Polish Academy of Sciences. He holds a Master’s degree in industrial chemistry and a PhD in chemical and processing engineering, both from La Sapienza University
- Instytucja: The International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Nowadays, biomedical research is facing a series of significant problems. These include i) scientific challenges – the available in vitro and animal models are often inadequate for the recapitulation of human biology, ii) economic issues – the cost related to drug development is skyrocketing, and iii) ethical concerns – the use of animals for research purposes is perceived by the public opinion as cruel and unjust. In this context, digital manufacturing technologies represent one of the most promising solutions to address these limitations, enabling for a rapid, highly-customized manufacturing of cellularized constructs that can efficiently mimic both the structural and functional properties of native tissues/organs. Within the seminar, we will give a brief overview of the state-of-the-art in musculoskeletal tissue engineering and talk about the upcoming innovations required to shake up this area of study.
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29 marca 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 29 marca 2023, from 2 PM to approx. 3:00 PM
- Miejsce:
In-person at IChF Aula.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Andrzej Krześniak, M. Sc.
‘Electrochemical processes in small volumes and optical analysis of their products’
Wojciech Mazurkiewicz, M. Sc.
‘Getting to know the microelectrodes better: Optimization toward neurotransmitters’
This session will be chaired jointly by the PhD students Adam Kowalski and Maciej Biały.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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22 marca 2023
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Ph.D. Seminar
- In-person at IChF Aula
- Zobacz więcej
Ph.D. Seminar
- Data: 22 marca 2023, from 2 PM to approx. 3 PM.
- Instytucja: In-person at IChF Aula
- Miejsce:
In-person at IChF Aula
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Adam Kowalski, M. Sc.
‘Separating the effect of depletion interactions and Coulomb forces in crowded environments’
Maciej Biały, M. Sc.
‘Spatial organization of quantum dot droplets and their coupling effect to silver nanowires’
This session will be chaired jointly by the PhD students Enkhlin Ochirbat and Dominik Korol.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
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16 marca 2023
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Light-driven molecular reactivity in complex scenarios – in cells, at surfaces, in complex electron transfer cascades
- Prof. Benjamin Dietzek-Ivanšić, Leibniz Institute of Photonic Technology, Research Department Functional Interfaces, Germany
- Zobacz więcej
Light-driven molecular reactivity in complex scenarios – in cells, at surfaces, in complex electron transfer cascades
- Data: 16 marca 2023, 10:00 am
- Prelegent: Prof. Benjamin Dietzek-Ivanšić, Leibniz Institute of Photonic Technology, Research Department Functional Interfaces, Germany
- Miejsce:
Aula (in-person seminar)
- Abstrakt:
Light is ubiquitous and light-driven processes are key, e.g., to the perception of the environment by vision and photosynthesis. Furthermore, light-responsive molecules and materials play a quintessential role in addressing central socio-economic challenges, e.g., transforming our economy towards renewable energies or developing therapeutic approaches to treat cancer. Consequently, research on light-activated molecules and materials, i.e., synthesis as well as functional and mechanistic studies on such systems are intensively researched.
This talk will focus on light-driven molecular reactivity of molecules in complex environments, focusing on the excited-state dynamics in molecular intermediates in photocathodes for light-driven hydrogen evolution, in complex electron transfer cascades and photo-activated drugs for cancer therapy. I will discuss our experimental approaches, e.g., combining electrochemistry with ultrafast time-resolved spectroscopy, to investigate the light driven molecular reactivity from new viewpoints and highlight implications for photocatalysis and photodrug design obtained from the spectroscopic-mechanistic studies.
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
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15 marca 2023
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Overview of Fulbright fellowships by Fulbright Ambassador to Poland
- Dr hab. Izabela Madura, prof. WUT, Warsaw University of Technology
- Funding opportunity IN-PERSON at IChF Aula
- Zobacz więcej
Overview of Fulbright fellowships by Fulbright Ambassador to Poland
- Data: 15 marca 2023, 14:00
- Prelegent: Dr hab. Izabela Madura, prof. WUT, Warsaw University of Technology
- Instytucja: Funding opportunity IN-PERSON at IChF Aula
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15 marca 2023
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Surface-enhanced femtosecond stimulated Raman spectroscopy - factors affecting the signal and its optimization
- Patryk Pyrcz, IChF Team 27 Laser Centre
- Seminar of the Photochemistry & Spectroscopy Department & Team 29 ONLINE
- Zobacz więcej
Surface-enhanced femtosecond stimulated Raman spectroscopy - factors affecting the signal and its optimization
- Data: 15 marca 2023, 10:00
- Prelegent: Patryk Pyrcz, IChF Team 27 Laser Centre
- Instytucja: Seminar of the Photochemistry & Spectroscopy Department & Team 29 ONLINE
- Miejsce:
Zoom link
Meeting ID: 981 3856 8245
Passcode: 413321
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13 marca 2023
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Polish-Japanese seminar IN-PERSON at IChF Aula
- Chair: prof. dr hab. Jerzy Górecki
- Zobacz więcej
Polish-Japanese seminar IN-PERSON at IChF Aula
- Data: 13 marca 2023, 11:45
- Prelegent: Chair: prof. dr hab. Jerzy Górecki
- Miejsce:
IN-PERSON at IChF Aula
- Abstrakt:
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9 marca 2023
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Shaping-up Reactivity by Tailored Photoredox & Supramolecular Anion-Binding Catalysis
- Prof. Olga Garcia Mancheño, Westfälische Wilhelms-Universität Münster, Germany
- Dream Chemistry Lecture IN-PERSON at IChF Aula
- Zobacz więcej
Shaping-up Reactivity by Tailored Photoredox & Supramolecular Anion-Binding Catalysis
Dream Chemistry Lectures
- Data: 9 marca 2023, 10:00
- Prelegent: Prof. Olga Garcia Mancheño, Westfälische Wilhelms-Universität Münster, Germany
- Instytucja: Dream Chemistry Lecture IN-PERSON at IChF Aula
- Miejsce:
IN-PERSON at IChF Aula
- Abstrakt:
In the past few years, organocatalysis have become a promising strategy to promote chemical reactions. However, the design of more efficient catalysts is of continuous demand. Aiming at solving some of the current reactivity and stability limitations of organocatalytic systems, our group is devoted to the design of innovative non-covalent and photoredox active structures for the development of robust metal-free synthetic methodologies. In this regard, we have recently introduced helical chiral triazoles as versatile multidentate H-donor structures that allow for challenging enantioselective transformations in anion-binding catalysis.[1,2] Their cooperative multidentate character permits the use of very low loadings (down to 0.05 mol%), while promoting an efficient transfer of chirality from the chiral contact ion-pair formed upon binding of the catalyst to a simple achiral anion to the final product. Herein, the remarkable performance of H-donor chiral triazole foldamers in the nucleophilic dearomatization of N- and O-heteroarenes (up to 99:1 e.r.) will be presented.[2,3]
Another line of research in our group deals with the design of novel acridinium salts for their application in photoredox-catalysis.[4] Hence, the synthesis, photophysical properties and application of tunable amide-acridinium structures with enhanced photoredox catalytic activity respect to the well-established C9-mesityl acridinium salts will also be discussed.[5]
[1] O. García Mancheño, Anion-Binding Catalysis, Wiley-VCH, 2022, Weinheim.
[2] M. Zurro, S. Asmus, S. Beckendorf, C. Mück-Lichtenfeld, O. García Mancheño, J. Am. Chem. Soc. 2014, 136, 13999.
[3] a) O. García Mancheño, S. Asmus, M. Zurro, T. Fischer, Angew. Chem. Int. Ed. 2015, 54, 8823; b) T. Fischer, J. Bamberger, M. Gómez-Martínez, D.G. Piekarski, O. García Mancheño, Angew. Chem. Int. Ed. 2019, 58, 3217; c) D.G. Piekarski, P. Steinforth, J. Bamberger, M. Gómez-Martínez, M. Schönhoff, O. García Mancheño, Chem. Eur. J. 2020, 26, 17598; d) M. Gómez-Martínez, M.C. Pérez-Aguilar, D.G. Piekarski, C.G. Daniliuc, O. García Mancheño, Angew. Chem. Int. Ed. 2021, 60, 5102; d) M. Aleksiev, O. García Mancheño, Chem. Commun. 2023, in press.
[4] N. A. Romero, D. A. Nicewicz, Chem. Rev. 2016, 116, 10075.
[5] a) A. Gini, M. Uygur, T. Rigotti, J. Aléman, O. García Mancheño, Chem. Eur. J. 2018, 24, 12509; b) M. Uygur, J. H. Kuhlmann, M.C. Pérez-Aguilar, D.G. Piekarski, O. García Mancheño, Green Chem. 2021, 23, 3392.
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
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9 marca 2023
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Uncovering the molecular mechanism for RPE65-membrane recognition and binding
- Dr Sheetal Uppal, National Eye Institute, National Institutes of Health, USA
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
Uncovering the molecular mechanism for RPE65-membrane recognition and binding
- Data: 9 marca 2023, 16:30
- Prelegent: Dr Sheetal Uppal, National Eye Institute, National Institutes of Health, USA
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
RPE65 retinol isomerase is an indispensable player in the visual cycle between the vertebrate retina and RPE. RPE65 is of significant medical interest as its lack in humans, due to RPE65 gene mutations, causes Leber Congenital Amaurosis (LCA), an early onset severe blindness in newborns and children. While the US FDA in 2017 approved the first successful gene therapy for an eye disease to treat LCA due to RPE65 mutations, it is quite expensive and unaffordable to many. Alternative pharmacological therapies to target retinal diseases due to lack of RPE65 are clearly needed but requires a complete understanding of RPE65’s mechanism and function. Despite a detailed understanding of RPE65 physiological function, structural understanding of RPE65-membrane interaction is still limited. While association with smooth endoplasmic reticulum (sER) membrane is necessary for catalytic function (substrate access), RPE65 lacks a membrane insertion domain. Moreover, the loop region that is believed to interact with sER is unresolved and apparently disordered in all crystal structures of RPE65. This loop contains aa107-125, a predicted amphipathic helix. We previously showed that palmitoylation of C112, within aa107-125, is partly responsible for RPE65-membrane association. In our recent work, we report the mechanism of membrane recognition and binding by RPE65. We found that binding of an aa107–125 synthetic peptide with membrane-mimicking micellar surfaces induces its transition from an unstructured loop to an amphipathic α-helical (AH) structure, but that this transition is automatic in the C112-palmitoylated peptide. We demonstrate that the AH significantly affects palmitoylation level, membrane association, and isomerization activity of RPE65. Furthermore, aa107–125 functions as a membrane sensor and the AH as a membrane-targeting motif sufficient to target heterologous proteins to liposomes or ER. Molecular dynamic simulations clearly show AH-membrane insertion, supporting our experimental findings. Collectively, these studies allow us to propose a working model for RPE65-membrane binding, and to provide a novel role for cysteine palmitoylation.
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8 marca 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 8 marca 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via ZOOM on Wednesday, March 8, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400; https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Joanna Celej, M. Sc.
‘Electrochemical detection of epirubicin as anticancer drug using Fe3O4 / ITO electrode’
Ariba Aziz, M. Sc.
‘Investigating catalytic activity of electroactive substances via scanning electrochemical microscopy’
This session will be chaired by the PhD student Kateryna Kravets, M. Sc.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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3 marca 2023
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Topic: journal article Friedel Oscillations Induced by Magnetic Skyrmions: From Scattering Properties to All-Electrical Detection
- Discussion leader: dr Aleksandra Siklitckaia (Team 20 Cooperative Catalysis)
- Coffee semiar IN-PERSON at IChF Conference Room
- Zobacz więcej
Topic: journal article Friedel Oscillations Induced by Magnetic Skyrmions: From Scattering Properties to All-Electrical Detection
Coffee semiar
- Data: 3 marca 2023, 1:00 PM
- Prelegent: Discussion leader: dr Aleksandra Siklitckaia (Team 20 Cooperative Catalysis)
- Instytucja: Coffee semiar IN-PERSON at IChF Conference Room
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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2 marca 2023
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Targeted gene delivery: strategies for changing the viral tropism
- Dr Jagoda Płaczkiewicz, Postdoctoral researcher at the Ophthalmic Biology Group (Obi) within ICTER, in the field of molecular biology.
- Joint seminar of ICTER & Department I ONLINE
- Zobacz więcej
Targeted gene delivery: strategies for changing the viral tropism
- Data: 2 marca 2023, 16:30 (UTC+1)
- Prelegent: Dr Jagoda Płaczkiewicz, Postdoctoral researcher at the Ophthalmic Biology Group (Obi) within ICTER, in the field of molecular biology.
- Instytucja: Joint seminar of ICTER & Department I ONLINE
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Rabies virus (RV) can infect neurons via retrograde transport, from postsynaptic to presynaptic cells. RV is also an attractive candidate for gene delivery, as it can provide fast and high expression of transgenes that can be potentially used in gene therapy of degenerative diseases. Genetic modifications of the envelope glycoprotein (G) can impact the selectivity of RV infections, and such modification has been successfully applied to manipulate RV in the TVA/EnvA system. Pseudotyping of G-deleted RV (RVΔG) with chimeric protein consisting of the ectodomain of EnvA protein and the cytoplasmic domain of G protein enables to restrict initial infection with RV to cells expressing non-mammalian TVA receptor, delivered by Adeno Associated Virus (AAV) helper viral vector (F. Osakada et al., 2013). Expression of transgenes in AAV plasmids is driven by an upstream promoter that can be constitutive or cell-type specific, therefore specificity of infection can be uniquely controlled on that level (C. Domenger et al., 2019). The main goal of our projects is to use AAV vectors and RV as gene therapy tools, that specifically infect cells within the retina, to treat retinal degenerative diseases. We have managed to isolate promoters to drive the expression of transgenes in specific types of cells within the retina. Further, we demonstrated that pseudotyping of Viral Like Particles (VLPs) with chimeric G proteins enables them to infect desired cells, and this approach is going to be used for the pseudotyping of RV. Indeed, our results indicate that RV is a potential tool for effective gene therapy, as we successfully, simultaneously transduced retinal cells with up to four different transgenes. Further analysis will reveal the therapeutic effect of performed gene deliveries.
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1 marca 2023
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Effect of varying expression of EpCAM on the efficiency of CTCs detection by SERS-based immunomagnetic optofluidic device
- Marta Czaplicka, IChF Team 1 Plasmonic nanostructures for bio-spectroscopic analysis
- Seminar of the Photochemistry & Spectroscopy Department & Team 29 ONLINE
- Zobacz więcej
Effect of varying expression of EpCAM on the efficiency of CTCs detection by SERS-based immunomagnetic optofluidic device
- Data: 1 marca 2023, 10:00 AM
- Prelegent: Marta Czaplicka, IChF Team 1 Plasmonic nanostructures for bio-spectroscopic analysis
- Instytucja: Seminar of the Photochemistry & Spectroscopy Department & Team 29 ONLINE
- Miejsce:
Zoom link
Meeting ID: 983 9200 9827
Passcode: 203977
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1 marca 2023
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European Institute of Innovations Health
- Representative: Joanna Broy (Boranowska), IChF contact person: Marta Sosnowska (msosnowska@ichf.edu.pl)
- Research funding opportunity IN-PERSON at IChF Aula
- Zobacz więcej
European Institute of Innovations Health
- Data: 1 marca 2023, 11:45 am
- Prelegent: Representative: Joanna Broy (Boranowska), IChF contact person: Marta Sosnowska (msosnowska@ichf.edu.pl)
- Instytucja: Research funding opportunity IN-PERSON at IChF Aula
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1 marca 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 1 marca 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via ZOOM on Wednesday, March 1, from 2 PM to approx. 3:30 PM.
Meeting ID: 505-434-0400; https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
1) Kateryna Kravets, M. Sc.
‘Host-guest crystals of p-sulfocalix[n]arenes with pentamidine’
2) Joanna Kruszyńska, M. Sc.
‘Effect of 1,3-disubstituted urea derivatives as additives on the efficiency and stability of perovskite solar cells’
3) BASIC INFORMATION MEETING FOR THE NEWLY RECRUITED DOCTORAL STUDENTS - questions & answers (Robert Kołos)
This session will be chaired jointly by the PhD students Elavenil Ganesan and Julia Maciejewska-Komorowska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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24 lutego 2023
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Topic: freely available book by K. Pujer "Współczesna Rodzina. Szanse - Zagrożenia - Kierunki przemian."
- dr Eugeniusz Biłonożko (political scientist)
- Zobacz więcej
Topic: freely available book by K. Pujer "Współczesna Rodzina. Szanse - Zagrożenia - Kierunki przemian."
- Data: 24 lutego 2023, 1:00 PM
- Prelegent: dr Eugeniusz Biłonożko (political scientist)
- Miejsce:
Coffee semiar IN-PERSON at IChF Conference Room
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23 lutego 2023
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A compact conformation of Teneurin dimers for neuronal circuit wiring
- Dr Dimphna H. Meijer, TU Delft
- Zobacz więcej
A compact conformation of Teneurin dimers for neuronal circuit wiring
- Data: 23 lutego 2023, 16:00 (UTC+1)
- Prelegent: Dr Dimphna H. Meijer, TU Delft
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Molecular recognition mechanisms during neuronal synapse formation are still incompletely understood. The neuronal transmembrane protein family of Teneurins is required for synaptic partner matching in the visual and hippocampal systems in vertebrates. It remains however unclear how individual Teneurin molecules form macromolecular cis- and trans-cellular protein complexes at the neuronal synapse. The structure reveals a compact conformation of the dimer that is stabilized by C-rich, YD-shell and ABD-mediated interactions. We identified three conserved calcium binding sites in the C-rich domain that control the compactness and stability of Teneurin4 dimers. We then use in vivo cellular assays to visualize how these compact cis dimers establish homomeric trans interactions. Together, these findings support a role for Teneurins as a scaffold for macromolecular complex assembly and the establishment of cis- and trans-synaptic interactions to construct functional neuronal circuits.
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22 lutego 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 22 lutego 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3:30 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Elavenil Ganesan M. Sc.
‘Photochemistry and spectroscopy of pnictogen-containing small organic molecules’
Julia Maciejewska-Komorowska, M. Sc.
‘Facilitated transfer of anions at the three-phase junction. Application to the evaluation of ionophores’
Karolina Zielonka, M. Sc.
‘Single- and multilayer graphene: Influence of the number of layers on the interaction with single dye molecules'
This session will be chaired jointly by the PhD students Bartłomiej Bałamut and Mateusz Pielach.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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16 lutego 2023
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Improved tool tracking algorithm for eye surgery based on combined color space masks
- Krzysztof Gromada, ICTER IChF
- Joint seminar of ICTER & Department I
- Zobacz więcej
Improved tool tracking algorithm for eye surgery based on combined color space masks
- Data: 16 lutego 2023, 15:30 (UTC+1)
- Prelegent: Krzysztof Gromada, ICTER IChF
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
Surgical tool pose estimation is important for surgical image guidance systems as near real-time tool tip position and angle estimation are needed, for example, for intraoperative optical coherence tomography tracking in retinal microsurgery. This paper presents an algorithm that improves on the current state-of-the-art algorithm for surgical tool tracking in posterior eye surgery first introduced by Alsheakhali et al. We propose better tool segmentation based on combined color space masks and set thresholds, a shadow-insensitive tool edge detector, and a more robust tool tip detector. The presented algorithms are benchmarked based on a series of manually annotated images of posterior eye surgery. Our modifications improve the algorithm’s accuracy several-fold in a posterior surgery video case study where the tool shadow has a confounding effect and spot illumination by the endoilluminator occurs at times.
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9 lutego 2023
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Role of basal forebrain in the visual proccesing
- Katarzyna Kordecka, PhD Postdoctoral researcher at ICTER. PhD degree from Nencki Institute of Experimental Biology, Polish Academy of Sciences.
- International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Role of basal forebrain in the visual proccesing
- Data: 9 lutego 2023, 16:30 (UTC+1)
- Prelegent: Katarzyna Kordecka, PhD Postdoctoral researcher at ICTER. PhD degree from Nencki Institute of Experimental Biology, Polish Academy of Sciences.
- Instytucja: International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 931 4566 7092
Passcode: 488333
- Abstrakt:
A variety of neural structures contribute to the brain’s ability to process and modulate visual information. One of the subcortical areas that provide input projection to visual cortex and thus influence the properties of the visual response is Basal Forebrain (BF). The Basal Forebrain is predominantly characterized by its’ cholinergic projection patterns to the visual cortex. The functional contribution of this input is only starting to become understood. We propose that cholinergic modulation coming from BF will significantly impact single neuronal responses of the primary visual cortex (V1) in Long-Evans rats. The primary goal of this project is to understand the Basal Forebrain's role in the processing of the visual information in the V1 and its effect on the visual system activity. To answer this question, we used cutting-edge techniques like viral tracing and optogenetic stimulation of neuronal circuits paired with electrophysiological recordings in the primary visual cortex. Precisely, we injected the modified Rabies virus (RV) into the V1 to retrogradely trace inputs coming from the Basal Forebrain. The RV carries opsins to allow for both activation and inhibition of infected cells in the Basal Forebrain. We hypothesize that the manipulation of the BF changes the selectivity of single cells in the V1. Indeed, our preliminary results confirm this hypothesis. The most prominent observation in our experiment is a significant change in firing rate when showing various directions of drifting gratings at optimal Spatial Frequency (SF), Temporal Frequency (TF), and Size. However, this change was different for different layers (depth) in the cortex. All layers tend to have a lower firing rate; however, the cell around layer IV tend to have an increased firing rate. Perhaps the most important result is the change in the optimal stimulus size. Most cells showed decreased optimal stimulus size, and the difference between conditions tends to be stronger in the upper layers than in the deep layers of the V1. Our preliminary results suggest that the Basal Forebrain plays a substantial role in the modulation of the center-surround interactions. These results are in line with the previous data from Lyon Lab (Lean et al., 2018), showing that the main inputs from BF are coming into the GABAergic cells in the V1.
The project is supported by the National Science Center, Poland (2020/39/D/NZ4/01881) for AT.
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26 stycznia 2023
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Metal amides and imides as a new family of energy storage materials
- Dr. Joshua Makepeace, School of Chemistry, University of Birmingham, UK
- Dream Chemistry Lecture
- Zobacz więcej
Metal amides and imides as a new family of energy storage materials
Dream Chemistry Lecture series
- Data: 26 stycznia 2023, 10:00
- Prelegent: Dr. Joshua Makepeace, School of Chemistry, University of Birmingham, UK
- Instytucja: Dream Chemistry Lecture
- Miejsce:
Assembly hall (in-person seminar)
The event is obligatory to all doctoral students and of interest, we hope, to the whole IChF community.
- Abstrakt:
The search for new families of materials to fulfil the wide range of requirements for energy storage in a sustainable energy system is of great importance. Inorganic imides and amides have been under-explored as functional materials aside from interest in the hydrogen storage properties of the lithium amide-lithium hydride composite. However, these materials display promising performance as catalysts for the synthesis and decomposition of ammonia. These reactions are gaining increasing interest in the context of the storage and export of large quantities of renewable energy via the electrolysis of water to produce hydrogen. Lithium imide-based materials show very promising ammonia synthesis and decomposition activity to rival that of ruthenium. The bulk variation in composition of the materials under active conditions, revealed by in situ diffraction analysis, appears to be a key aspect of their function.
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25 stycznia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 25 stycznia 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3:30 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Bartłomiej Bałamut M. Sc.
‘Movement perception in healthy and degenerated mouse retina’
Cassia Corso Silva, M. Sc.
‘Stimulated Raman Scattering microscope for leukemic cell imaging’
Mateusz Pielach, M. Sc.
‘All-polarization-maintaining Yb-doped fiber oscillator with a hybrid ring-linear cavity'
This session will be chaired jointly by the PhD students Abdolvahab Amirsalari and Patryk Pyrcz.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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23 stycznia 2023
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Potentials and Challenges in Process Modelling in Biotechnology
- Dr Eric von Lieres from Research Center Juelich
- Department VII Special Seminar on Process Modeling in Biotechnology
- Zobacz więcej
Potentials and Challenges in Process Modelling in Biotechnology
- Data: 23 stycznia 2023, 14:00
- Prelegent: Dr Eric von Lieres from Research Center Juelich
- Instytucja: Department VII Special Seminar on Process Modeling in Biotechnology
- Miejsce:
Conference room
- Abstrakt:
Modelling still plays a minor role in the biopharmaceutical industry as compared to
the automotive and aerospace industries, for instance. Much theory has been developed
over the last decades, studying individual mechanisms and academic systems.
Industrial processes are typically more complex due to multiple components, variable
feed composition, non-linear scaling with size, and numerous other parameters.
Recent improvements in computing power, mathematical software and data availability
allow for the first time to meet these challenges by applying models of realistic
complexity. Such models can potentially help to improve process understanding,
transfer knowledge from microfluidics to production scale, speed up the process
development, and focus or even reduce experimental effort.
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19 stycznia 2023
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Sale of Curiosity Diagnostics by Scope Fluidics - business case of one of the largest transactions on the medtech market in Poland
- Szymon Ruta, Board Member (SVP) & CFO in Scope Fluidics Group
- IChF Aula
- Zobacz więcej
Sale of Curiosity Diagnostics by Scope Fluidics - business case of one of the largest transactions on the medtech market in Poland
From Research to Bussiness PD2PI lecture series
- Data: 19 stycznia 2023, 10:00
- Prelegent: Szymon Ruta, Board Member (SVP) & CFO in Scope Fluidics Group
- Instytucja: IChF Aula
- Miejsce:
IChF Aula
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19 stycznia 2023
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"Molecular blinds" in the retina of the human eye
- Prof. dr hab. Wiesław I. Gruszecki, Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, Lublin, Poland
- Joint seminar of ICTER & Department I
- Zobacz więcej
"Molecular blinds" in the retina of the human eye
Joint seminar of ICTER & Department I
- Data: 19 stycznia 2023, 16:30
- Prelegent: Prof. dr hab. Wiesław I. Gruszecki, Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, Lublin, Poland
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
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18 stycznia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 18 stycznia 2023, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Abdolvahab Amirsalari, M. Sc.
‘SERS excitation studies of the single nanoantenna’
Patryk Pyrcz, M. Sc.
‘Plasmonic nanocavity for single-molecule detection’
This session will be chaired jointly by the PhD students Pavlo Hyziuk and Jarosław Michalski.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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12 stycznia 2023
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Founding and running Fluence, a successful deep tech company
- Dr Michał Nejbauer, CEO and Co-Founder at Fluence Sp. z o.o
- IChF Aula
- Zobacz więcej
Founding and running Fluence, a successful deep tech company
From Research to Bussiness PD2PI lecture series
- Data: 12 stycznia 2023, 10:00
- Prelegent: Dr Michał Nejbauer, CEO and Co-Founder at Fluence Sp. z o.o
- Instytucja: IChF Aula
- Miejsce:
IChF Aula
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11 stycznia 2023
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 11 stycznia 2023, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3:30 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Pavlo Hyziuk, M. Sc.
‘Enhancing supramolecular catalysis by interaction with gold nanoparticles’
Jarosław Michalski, M. Sc.
‘Biophysical methods in mRNA vaccines analysis’
Aleksandra Zasada, M. Sc.
‘Kontrola regioselektywności katalitycznych reakcji transferowych z wykorzystaniem oddziaływań niekowalencyjnych' (in Polish)
This session will be chaired jointly by the PhD students Aleksandra Borkenhagen, Karolina Opała, and Dawid Kornacki.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
Pozostałe lata
2022 Rozwiń
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15 grudnia 2022
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Therapeutic mitochondria transplantation in stroke and future perspectives
- Kazuhide Hayakawa, PhD Assistant Professor of Radiology. Harvard Medical School, Massachusetts General Hospital.
- International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Therapeutic mitochondria transplantation in stroke and future perspectives
- Data: 15 grudnia 2022, 16:30 (UTC+1)
- Prelegent: Kazuhide Hayakawa, PhD Assistant Professor of Radiology. Harvard Medical School, Massachusetts General Hospital.
- Instytucja: International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Mitochondria actively participate in the regulation of cell respiratory mechanisms, metabolic processes, and energy homeostasis in the central nervous system (CNS). Because of the requirement of high energy, neuronal functionality and viability are largely dependent on mitochondrial functionality. In the context of CNS disorders, disruptions of metabolic homeostasis caused by mitochondrial dysfunction lead to neuronal cell death and neuroinflammation. Therefore, restoring mitochondrial function becomes a primary therapeutic target. Recently, accumulating evidence suggests that active mitochondria are secreted into the extracellular fluid and potentially act as non-cell-autonomous signals in CNS pathophysiology. Here, we overview findings that implicate the presence of cell-free extracellular mitochondria and the critical role of intercellular mitochondrial transfer in stroke. We also discuss isolated mitochondrial transplantation as a novel therapeutic intervention and the future perspectives.
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15 grudnia 2022
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Single-cell assays in microdroplets
- dr Tomasz Kamiński, Institute of Microbiology, Faculty of Biology, the University of Warsaw
- Microfluidics and Complex Fluids Group
- Zobacz więcej
Single-cell assays in microdroplets
- Data: 15 grudnia 2022, 11:30 am
- Prelegent: dr Tomasz Kamiński, Institute of Microbiology, Faculty of Biology, the University of Warsaw
- Instytucja: Microfluidics and Complex Fluids Group
- Miejsce:
IChF Assembly hall (in-person seminar)
- Abstrakt:
Water-in-oil droplets, made and handled in microfluidic devices, provide a new experimental format in which ultrahigh throughput experiments can be conducted faster and with minimal reagent consumption. An increasing number of studies have emerged that applied this approach in single-cell assays. The seminar will cover the recent research focused on the directed evolution of enzyme biocatalysts, the efficient and functional selection of rare strains of bacteria and the development of novel droplet microfluidic technologies for profiling of single cells transcriptomes. Recent advances in single-cell RNA sequencing methodologies have massively scaled up the number of cells that can be processed in a single reaction. However, most droplet-based scRNA-seq methods utilize only a single microfluidic step of co-compartmentalization of cells with barcoded molecules, which limits the array of applications of single-cell genomics assays. Here we present novel microfluidic pico-injection and droplet sorting modules that allow for complex single-cell assays in high-throughput droplet format. We harness the unique properties of these multi-step droplet protocols to i) deliver a high-quality molecular atlas of mouse brain development using highly damaged input material, and to ii) generate the first large-scale total-RNA-seq atlas to profile mouse gastrulation and early organogenesis.
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14 grudnia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 14 grudnia 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3:30 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Aleksandra Borkenhagen, M. Sc.
‘Controlled transformations of organozinc precursor system towards quantum-sized semiconductor nanocrystals'
Karolina Opała, M. Sc.
‘Mechanochemical preparation of DMAI-based hybrid halide perovskites: Structure, properties, and phase transitions’
Dawid Kornacki, M. Sc.
‘CO2 conversion by nitrogen-rich organic bases'
This session will be chaired jointly by the PhD students S. Sareen, K. Kucharska, and J. Materska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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8 grudnia 2022
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Can photons generate magnetization in non-magnetic materials? - design and synthesis of molecular photomagnets
- dr hab. Dawid Pinkowicz. prof. UJ; Jagiellonian University, Kraków
- Institute of Physical Chemistry, PAS
- Zobacz więcej
Can photons generate magnetization in non-magnetic materials? - design and synthesis of molecular photomagnets
- Data: 8 grudnia 2022, 10:00
- Prelegent: dr hab. Dawid Pinkowicz. prof. UJ; Jagiellonian University, Kraków
- Instytucja: Institute of Physical Chemistry, PAS
- Miejsce:
IChF Aula (in-person)
- Abstrakt:
Molecular photomagnets[1] can be designed and prepared via a bottom-up modular approach using low-energy preparation methods developed by coordination, organometallic or supramolecular chemistry, and crystal engineering with the support from physical and computational sciences. They belong to the class of molecule-based materials that become paramagnetic, ferromagnetic or simply change their magnetic properties upon illumination[2] - a feature hardly accessible in conventional solids - metal alloys and oxides.
Currently known photomagnetic compounds are merely laboratory curiosities due to the low operation temperatures below the boiling point of nitrogen in most cases[3]. Hence, the major goal of this field of research is the discovery of new strategies for room temperature (RT) photomagnets that would show light-induced ON/OFF ferromagnetic switching under normal conditions.
[1] C. Mathonière, H. Tokoro, S.-I. Ohkoshi, Molecular Photomagnets. In Molecular Magnetic Materials (eds B. Sieklucka and D. Pinkowicz) (2017)
2] X. Qi, et al., Angew. Chem. Int. Ed. 59, 3117 (2021)
[3] M. Magott, et al., J. Am. Chem. Soc. 140, 15876 (2018)
The event is obligatory to all doctoral students.
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8 grudnia 2022
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Research and clinical applications of anterior segment OCT imaging
- Prof. Marco Ruggeri, Research Associate Professor, University of Miami, Co-director of the Ophthalmic Biophysics Center at Bascom Palmer Eye Institute.
- Joint seminar of ICTER & Department I ON-LINE
- Zobacz więcej
Research and clinical applications of anterior segment OCT imaging
- Data: 8 grudnia 2022, 16:30
- Prelegent: Prof. Marco Ruggeri, Research Associate Professor, University of Miami, Co-director of the Ophthalmic Biophysics Center at Bascom Palmer Eye Institute.
- Instytucja: Joint seminar of ICTER & Department I ON-LINE
- Miejsce:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
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7 grudnia 2022
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A novel set-up for transient absorption and fluorescence measurement in the sub-picosecond to hundreds of nanoseconds range
- Dr Hector Rodriguez (Team 8 Dynamics of light-induced bimolecular reactions)
- Seminar of the Department of Photochemistry and Spectroscopy ON-LINE
- Zobacz więcej
A novel set-up for transient absorption and fluorescence measurement in the sub-picosecond to hundreds of nanoseconds range
- Data: 7 grudnia 2022, 10:15
- Prelegent: Dr Hector Rodriguez (Team 8 Dynamics of light-induced bimolecular reactions)
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy ON-LINE
- Miejsce:
Zoom link
Meeting ID: 926 1932 4961
Passcode: 525879
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7 grudnia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 7 grudnia 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3: PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Sakshi Sareen, M. Sc.
‘Physical marker of cell death'
Karolina Kucharska, M. Sc.
‘Photobleaching revealed fraction of nondetectable YO-PRO intercalated into DNA'
Joanna Materska, M. Sc.
‘Growing and motile active matter in computer simulations: Clustering, swirling, and other interesting phenomena'
This session will be chaired jointly by the PhD students S. Raza, A. Karpińska, and R. Zbonikowski.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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1 grudnia 2022
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Jak publikować w ramach nowych regulacji? Instrukcja krok po kroku. (PL)
- Adam Kubas, Z-ca dyrektora d/s naukowych, Martin Jönsson-Niedziólka, Pełnomocnik ds. otwartego dostępu do publikacji i wyników badań naukowych
- ON-LINE
- Zobacz więcej
Jak publikować w ramach nowych regulacji? Instrukcja krok po kroku. (PL)
- Data: 1 grudnia 2022, 10:00
- Prelegent: Adam Kubas, Z-ca dyrektora d/s naukowych, Martin Jönsson-Niedziólka, Pełnomocnik ds. otwartego dostępu do publikacji i wyników badań naukowych
- Instytucja: ON-LINE
- Miejsce:
Zoom link
Meeting ID: 985 3662 6102
Passcode: 249792
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
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1 grudnia 2022
-
A step-by-step guide for how to publish under the new system (EN)
- Adam Kubas, Deputy Director for Scientific Affairs Martin Jönsson-Niedziólka, Plenipotentiary for open access to scientific
- ON-LINE
- Zobacz więcej
A step-by-step guide for how to publish under the new system (EN)
- Data: 1 grudnia 2022, 11:00
- Prelegent: Adam Kubas, Deputy Director for Scientific Affairs Martin Jönsson-Niedziólka, Plenipotentiary for open access to scientific
- Instytucja: ON-LINE
- Miejsce:
Zoom link
Meeting ID: 985 3662 6102
Passcode: 249792
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
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1 grudnia 2022
-
Continuum and equivalent circuit modelling for porous electrode charging
- Dr Mathijs Janssen, Oslo University
- IChF PAN
- Zobacz więcej
Continuum and equivalent circuit modelling for porous electrode charging
- Data: 1 grudnia 2022, 13:15
- Prelegent: Dr Mathijs Janssen, Oslo University
- Instytucja: IChF PAN
- Miejsce:
IChF PAN conference hall
- Osoba kontaktowa:
Svyatoslav Kondrat
- Abstrakt:
The dynamics of electrolytes in narrow pores is important in various fields of science and technology. Examples range from axons firing in the brain and plant cells signalling through plasmodesmata to energy storage in supercapacitors. In the porous carbon electrodes of supercapacitors, ions move over millimetres through macropores until they arrive at nanopores, where they screen the electrode’s surface charge. In the first part of the talk, I will discuss several models for this multi-scale charging process. In particular, I will present analytical [1] and finite-element solutions [2] to the Poisson-Nernst-Planck equation for the charging of cylindrical electrolyte-filled pores. With these solutions, I will delineate the validity of the popular “transmission line” (TL) circuit model [3,4]. In the second part of the talk, I will discuss how the supercapacitors can harvest sustainable energy from temperature differences and from the salinity differences between sea and river water.
[1] T. Aslymov and M. Janssen, Electrochim. Acta 424, (2022)
[2] J. Yang, M. Janssen, C. Lian, R. van Roij, J. Chem. Phys. 156, (2022)
[3] R. de Levie, Electrochim. Acta 8, (1963)
[4] M. Janssen, Phys. Rev. Lett. 126, (2021)
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30 listopada 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 30 listopada 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Sada Raza, M. Sc.
‘Selective inactivation of bacteriophages using amphiphilic polymers'
Aneta Karpińska, M. Sc.
‘Is bevacizumab taken up by cells?'
This session will be chaired jointly by the PhD students A. Qayyum and M. Wdowiak.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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24 listopada 2022
-
Training: Open access to publications and research data - regulations of funders, CeON and RepOD repositories (EN)
- Open Science Team ICM UW
- ON-LINE
- Zobacz więcej
Training: Open access to publications and research data - regulations of funders, CeON and RepOD repositories (EN)
- Data: 24 listopada 2022, 9:00-13:00
- Prelegent: Open Science Team ICM UW
- Instytucja: ON-LINE
- Miejsce:
The training will take place on the ClickMeeting platform
Link: https://supercomputingfrontiers.clickmeeting.com/open-access-ichfpan
Password: ICHFPAN
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
- Abstrakt:
Training session agenda (EN)
9:00 - 9:15 – Welcome and meeting introduction
9:15 - 10:00 – Open Science: open access to scientific publications and open research data
Open access models
Benefits of open access and research data management and sharing
Open science policies adopted by European Commission and National Science Centre
10:00 - 10:20 – CeON Repository
10:20 - 10:50 – Repository for Open Research Data RepOD
10:50 - 11:20 – Brake
11:20 - 13:00 – Legal aspects of open science
Scientific publications and research data as subjects of legal regulation
Academic regulations on intellectual property, publishers’ policies
Basic rules for drafting contracts
Types of open licenses - Creative Commons
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24 listopada 2022
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Structural elucidation of Retinol binding protein 3: One step closer to unfolding the effect of ligands on the conformation of the protein
- Vineeta Kaushik, PhD. Assistant Professor at the Institute of Physical Chemistry, Polish Academy of Sciences Postdoc at the Integrated Structural Biology Group, ICTER PASIFIC grant winner
- International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Structural elucidation of Retinol binding protein 3: One step closer to unfolding the effect of ligands on the conformation of the protein
- Data: 24 listopada 2022, 16:30 (UTC+1)
- Prelegent: Vineeta Kaushik, PhD. Assistant Professor at the Institute of Physical Chemistry, Polish Academy of Sciences Postdoc at the Integrated Structural Biology Group, ICTER PASIFIC grant winner
- Instytucja: International Centre for Translational Eye Research and the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Retinol binding protein 3 (RBP3) is a major component of the interphotoreceptor matrix (the space between the photoreceptor cells and the retinal pigment epithelium (RPE)) and mediates the interaction between rods, cones, RPE and Muller cells by shuttling retinoids and potentially lipids. Mammalian RBP3 is a single polypeptide having four modules, and each consists of ~300 amino acids.
In our proposed project, we will determine the structure of RBP3 protein at a high resolution to understand the role of the cooperativity mechanism and open the possibility of structure-based drug design. Along with this, we plan to use the method Small Angle X-Ray Scattering (SAXS) to get more structural information about the protein with different ligand concentrations. The cooperativity mechanism and effect of the ligands on the protein are unknown, and in this way, we can get the answer to some unsolved queries. Apart from this, there is an anti-correlation between amounts of RBP3 protein and the severity of diabetic retinopathy (DR), and this protein could be a beneficial biomarker in the field of diabetic retinopathy. The quantification, structural determination and potential monitorization of RBP3 in DR, and at an early stage, could be a ray of hope in the development of new therapeutic approaches for DR.
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23 listopada 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 23 listopada 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400; https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Mateusz Wdowiak, M. Sc.
‘Elimination of drug-resistant bacteria using tea-extract silver nanoparticles'
Rafał Zbonikowski, M. Sc.
‘Stimuli-responsive functional nanoparticles at fluid/liquid interface '
This session will be chaired jointly by the PhD students Kinga Głuchowska and Karthika Kappalakandy Valapil.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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22 listopada 2022
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Szkolenie: Otwarty dostęp do publikacji i danych naukowych - regulacje grantodawców, repozytoria CeON i RepOD (PL)
- Zespół Otwartej Nauki ICM UW
- ON-LINE
- Zobacz więcej
Szkolenie: Otwarty dostęp do publikacji i danych naukowych - regulacje grantodawców, repozytoria CeON i RepOD (PL)
- Data: 22 listopada 2022, 9:00-13:00
- Prelegent: Zespół Otwartej Nauki ICM UW
- Instytucja: ON-LINE
- Miejsce:
Szkolenie odbędzie się poprzez platformę ClickMeeting
Link: https://supercomputingfrontiers.clickmeeting.com/otwarty-dostep-ichfpan
Hasło: ICHFPAN
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
- Abstrakt:
Program szkoleń online dla Instytutu Chemii Fizycznej Polskiej Akademii Nauk
Zapraszamy na szkolenia dotyczące otwartej nauki organizowane wspólnie przez Platformę Otwartej Nauki (ICM UW) i Instytut Chemii Fizycznej PAN w ramach współpracy w zakresie korzystania z otwartych repozytoriów publikacji i danych badawczych.
Program szkolenia (PL)
9:00 - 9:15 – Powitanie i wprowadzenie
9:15 - 10:00 – Otwarta nauka: otwarty dostęp do publikacji i danych badawczych
Modele otwartego dostępu do publikacji naukowych
Korzyści płynące z otwartego udostępniania rezultatów badań (publikacji i danych badawczych) i właściwego zarządzania danymi
Polityki Komisji Europejskiej i Narodowego Centrum Nauki w zakresie otwartego dostępu do rezultatów badań
10:00 - 10:20 – Repozytorium CeON
10:20 - 10:50 – Repozytorium Otwartych Danych RepOD
10:50 - 11:20 – Przerwa
11:20 - 13:00 – Prawne aspekty otwartej nauki (publikacje i dane)
Publikacje naukowe i dane jako przedmiot regulacji prawnej
Regulaminy własności intelektualnej uczelni, polityki wydawców
Podstawowe zasady formułowania umów
Platforma Otwartej Nauki (http://pon.edu.pl/) to centrum kompetencji w zakresie otwartych modeli komunikacji naukowej, które oferuje narzędzia informatyczne umożliwiające wdrażanie tych modeli, wspiera instytucje naukowe w realizacji polityk otwartości oraz prowadzi działania edukacyjne rozwijające kompetencje w zakresie otwartej nauki. Platforma Otwartej Nauki prowadzi ogólnopolskie serwisy udostępniające rezultaty badań naukowych:
Bibliotekę Nauki, serwis udostępnia artykuły publikowane przez polskie czasopisma oraz monografie naukowe; https://bibliotekanauki.pl,
Repozytorium CeON – serwis udostępnia publikacje naukowe deponowane przez autorów; https://depot.ceon.pl,
Repozytorium Otwartych Danych, serwis udostępnia dane badawcze deponowane przez badaczy oraz instytucje prowadzące badania; https://repod.icm.edu.pl/.
Rodzaje otwartych licencji na przykładzie Creative Commons
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16 listopada 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 16 listopada 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, https://zoom.us/j/5054340400
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Karthika Kappalakandy Valapil, M. Sc.
‘Development of electrode arrays for biosensing and pharmaceutical applications’
Abdul Qayyum, M. Sc.
‘Catalytic selective cleavage of C-C bond of lignin based β-O-4 model molecule'
This session will be chaired jointly by the PhD students Monika Mierzejewska and Sharat Devadas.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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16 listopada 2022
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Photophysics and Bimolecular Reactions of Metal Nanoclusters: a project
- Dr hab. Gonzalo Angulo, prof. IChF PAN (Team 8 Dynamics of light-induced bimolecular reactions)
- Seminar of the Department of Photochemistry and Spectroscopy ON-LINE
- Zobacz więcej
Photophysics and Bimolecular Reactions of Metal Nanoclusters: a project
- Data: 16 listopada 2022, 10:15
- Prelegent: Dr hab. Gonzalo Angulo, prof. IChF PAN (Team 8 Dynamics of light-induced bimolecular reactions)
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy ON-LINE
- Miejsce:
Zoom link
Meeting ID: 934 5789 3973
Passcode: 268061
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15 listopada 2022
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Poland-Japan symposium on spatio-temporal self-organization 2022
- Organized by Prof. Jerzy Górecki (Team 24)
- Symposium ON-LINE
- Zobacz więcej
Poland-Japan symposium on spatio-temporal self-organization 2022
- Data: 15 listopada 2022, 09:00
- Prelegent: Organized by Prof. Jerzy Górecki (Team 24)
- Instytucja: Symposium ON-LINE
- Miejsce:
Zoom link
Meeting ID: 849 6987 9001
Passcode: LQ721a
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14 listopada 2022
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Poland-Japan symposium on spatio-temporal self-organization 2022
- Organized by Prof. Jerzy Górecki (Team 24)
- Symposium ON-LINE
- Zobacz więcej
Poland-Japan symposium on spatio-temporal self-organization 2022
- Data: 14 listopada 2022, 09:00
- Prelegent: Organized by Prof. Jerzy Górecki (Team 24)
- Instytucja: Symposium ON-LINE
- Miejsce:
Zoom link
Meeting ID: 849 6987 9001
Passcode: LQ721a
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10 listopada 2022
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Wprowadzenie do Polityki Otwartego Dostępu IChF PAN (PL)
- Adam Kubas, Z-ca dyrektora d/s naukowych, Martin Jönsson-Niedziólka, Pełnomocnik ds. otwartego dostępu do publikacji i wyników badań naukowych
- ON-LINE
- Zobacz więcej
Wprowadzenie do Polityki Otwartego Dostępu IChF PAN (PL)
- Data: 10 listopada 2022, 10:00
- Prelegent: Adam Kubas, Z-ca dyrektora d/s naukowych, Martin Jönsson-Niedziólka, Pełnomocnik ds. otwartego dostępu do publikacji i wyników badań naukowych
- Instytucja: ON-LINE
- Miejsce:
Zoom link
Meeting ID: 993 7271 5779
Passcode: 023302
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
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10 listopada 2022
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Introduction to the IChF Policy on Open Science (EN)
- Adam Kubas, Deputy Director for Scientific Affairs Martin Jönsson-Niedziólka, Plenipotentiary for open access to scientific
- ON-LINE
- Zobacz więcej
Introduction to the IChF Policy on Open Science (EN)
- Data: 10 listopada 2022, 11:00
- Prelegent: Adam Kubas, Deputy Director for Scientific Affairs Martin Jönsson-Niedziólka, Plenipotentiary for open access to scientific
- Instytucja: ON-LINE
- Miejsce:
Zoom link
Meeting ID: 993 7271 5779
Passcode: 023302
- Osoba kontaktowa:
Adam Kubas, Z-ca dyrektora d/s naukowych
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10 listopada 2022
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Laser Doppler Holography presentation
- Zofia Bratasz, PhD candidate at the Paul Langevin Institute in Paris Master in Optical Engineering at the Sorbonne University
- Joint seminar of ICTER & Department I
- Zobacz więcej
Laser Doppler Holography presentation
- Data: 10 listopada 2022, 16:30
- Prelegent: Zofia Bratasz, PhD candidate at the Paul Langevin Institute in Paris Master in Optical Engineering at the Sorbonne University
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Coherent-light Doppler imaging by digital holography - laser Doppler holography - is a technique dedicated to visualisation of blood flow. It is based on detecting optical interferograms from light backscattered from the retina beating against a separate reference beam followed by digital image rendering. Measurement of the Doppler broadening allows to quantify an instantaneous velocity of red blood cells throughout the cardiac cycle. The analysis of the shape of the pulse-wave can provide important information about the mechanical properties of the retinal vessels. The same setup can be used for complementary cornea transparency imaging and aberration measurements.
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9 listopada 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 9 listopada 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, no password.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Monika Mierzejewska, M. Sc.
‘Metal-containing polymers for electrocatalysis'
Sharat Devadas, M. Sc.
‘Synthesis of porphyrinoid-PDMS polymers for photophysical analyses’
Kinga Głuchowska, M. Sc.
’Label-free methods to examine the bacterial population’
This session will be chaired jointly by the PhD students Shakeel Ahmad and Debjita Mukherjee.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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8 listopada 2022
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Hydrogen bonding
- Prof. Poul Erik Hansen, Department of Science and Environment, Roskilde University, Denmark
- Institute of Physical Chemistry, Polish Academy of Sciences
- Zobacz więcej
Hydrogen bonding
- Data: 8 listopada 2022, 11:00
- Prelegent: Prof. Poul Erik Hansen, Department of Science and Environment, Roskilde University, Denmark
- Instytucja: Institute of Physical Chemistry, Polish Academy of Sciences
- Miejsce:
In-person, at IChF Aula
Duration: 45 min + question time
The event is designed as an in-person seminar. However, an additional live stream will be provided for those who cannot attend.
However, for technical reasons, IT support in the case of loss of connection, etc. is impossible. For the same reason, questions for the lecturer or comments during the audience discussion cannot be conducted using the Zoom chat feature.
Zoom connection details are as follows:
https://zoom.us/j/98591187554?pwd=b09BNFhoVnFxOEV3dldUd21hOWpSZz09
Meeting ID: 985 9118 7554
Passcode: 505832
This event is supported by the Polish National Agency for Academic Exchange, grant no. BPI/STE/2021/1/00034/U/00001, STER.
- Abstrakt:
Hydrogen bonding is a very important structural parameter for both chemical and biological compounds. Hydrogen bonding influences a number of chemical properties such as boiling points, solubility, pKa values etc. and the interaction between small molecules (drugs) and biomolecules. Hydrogen bonding is a determining factor in the structure of carbohydrates, proteins, DNA and RNA. The talk will discuss spectroscopic techniques such as Infra Red and NMR to establish the presence of hydrogen bondsand characterize those. A special technique, deuterium isotope effects on chemical shifts to establish the presence of hydrogen bonds will be presented and used to find hydrogen bonds and salt bridgesin proteins in solution vs. X-ray structures. Related to intramolecular hydrogen bonding is tautomerism. Tautomerism is often elusive and methods will be given to establishing this phenomenon. Examples will be taken from chemistry and biology. In the latter case, the importance of having the right structure in relation to biological action is discussed. Finally, theoretical calculations will be touched upon.
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3 listopada 2022
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Volumetric OCT Imaging and Quantitative Analysis of Age-Related Changes in Ocular Structures
- Ireneusz Grulkowski, PhD, Associate Professor at Nicolaus Copernicus University
- Joint seminar of ICTER & Department I
- Zobacz więcej
Volumetric OCT Imaging and Quantitative Analysis of Age-Related Changes in Ocular Structures
- Data: 3 listopada 2022, 16:30
- Prelegent: Ireneusz Grulkowski, PhD, Associate Professor at Nicolaus Copernicus University
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Intraocular light scattering affects the contrast of the image created on the retina thus reducing the vision quality. Although generally the ocular components are transparent, the microstructural changes associated with ageing or external factors can affect intraocular light scattering. The presence of opacifications is an indicator of vision-affecting diseases such as corneal dystrophies, crystalline lens cataracts, vitreous floaters etc.
Optical coherence tomography (OCT) is a non-invasive imaging modality enabling generation of micrometer resolution, two-dimensional (2-D) cross-sectional images and three-dimensional (3-D) volumetric data presenting internal structure of optically scattering tissues. In OCT, back-scattered light can be used to visualize the structure of the eye. The advantages of this interferometric imaging modality include also high sensitivity, which enables detection of ultralow scattered light levels obtained from weakly scattering tissues such as the vitreous body.
In this talk, we will demonstrate in vivo enhanced three-dimensional visualization of vitreous and lens opacities in subjects of different ages using a swept source OCT system. We developed OCT instrument operating at the central wavelength of 1050 nm that was able to generate the cross-sectional images with axial resolution of 8 μm. Volumetric images were used to effectively map the opacities and to generate en-face projection images of opacities. The results revealed the changes in the transparency of the crystalline lens as well as liquefaction and scattering from well-organized opacified structures in the vitreous. The proposed imaging platform can be a new-generation ophthalmic diagnostic tool in the fundamental studies as well as for objective clinical evaluation and management of eye diseases.
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27 października 2022
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Chirality transfer across length scales
- Dr. Serena Arnaboldi, University of Milan, Italy
- In-person at IChF Aula
- Zobacz więcej
Chirality transfer across length scales
- Data: 27 października 2022, 09:30
- Prelegent: Dr. Serena Arnaboldi, University of Milan, Italy
- Instytucja: In-person at IChF Aula
- Miejsce:
In-person at IChF Aula.
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
- Abstrakt:
Chiral electrochemistry, including enantioselective electroanalysis and enantioselective electrosynthesis, is a quite explored area of research, but with a huge applicative potential yet to be studied.
Considering that chirality makes electrochemical processes smarter and applicable to issues of much higher added value we focused our attention on the characterization of new classes of inherently chiral materials. Inherent chirality is an intrinsic property of a molecule, propagating in the 2D and 3D space, which provides specific characteristics to the resulting material, obtained after depositing it on an electrode surface or after adding it as a chiral additive in a solution. Employing such molecules in enantioselective analysis, we have obtained for the first time a separation between the enantiomers of chiral probes (even drugs in complex matrix) in terms of peak potential values, testing racemic mixtures of the enantiomers of chiral drugs, and evaluating the enantiomeric excesses [1]. Starting from this point, by the optimization of the experimental conditions, several inherently chiral compounds with chemically different atropoisomeric scaffold and stereogenic elements, were synthetized and characterized, in order to be exploited in different fields (i.e. chiral electroanalysis, spintronics). Recently, the attractive and far unexplored potentialities of these systems, were also exploited in the field of bipolar electrochemistry, allowing to correlate a dynamic macro and microscopic event with the concentration of the enantiomers present in solution [2-5]. The efficient combination of the two approaches, the molecular static event with the macroscopic dynamic one, allowed me to be awarded with the prestigious ERC StG with the acronym “CHEIR”, a project funded by European Committee for five years. The global aim of such project is to achieve with unprecedented efficiency the propagation of chiral information along different length scales, based on the synergy of well-chosen molecular ingredients and physicochemical engineering. Such ambitious aim will be realized developing cargo-towing (synthetic) electro-pumps based on chiral conducting polymers for targeted drug-delivery applications.
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26 października 2022
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A primer on MCD (magnetic circular dichroism)
- Prof. Jacek Waluk, IChF
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
A primer on MCD (magnetic circular dichroism)
- Data: 26 października 2022, 10:15
- Prelegent: Prof. Jacek Waluk, IChF
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Meeting ID: 997 2188 8231
Passcode: 035057
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26 października 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 26 października 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, no password.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Shakeel Ahmad, M. Sc.
‘Exploring the role of sub-MIC antibiotic pre-exposure on bacterial heterogeneity at single cell level'
Debjita Mukherjee, M. Sc.
’Microfluidic-assisted Cell Encapsulation : A High-throughput Approach’
This session will be chaired jointly by the PhD students Shreyas Vasantham and Maria Celeste Tirelli.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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25 października 2022
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Polymer-based functional materials
- Dr. Tan Phat Huynh, Åbo Akademi University, Finland
- In-person at IChF Aula
- Zobacz więcej
Polymer-based functional materials
- Data: 25 października 2022, 12:00
- Prelegent: Dr. Tan Phat Huynh, Åbo Akademi University, Finland
- Instytucja: In-person at IChF Aula
- Miejsce:
In-person at IChF Aula
- Osoba kontaktowa:
Piyush Sindhu Sharma, PhD, hab.
Group Leader
Functional Polymers
Institute of Physical Chemistry, PAS
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20 października 2022
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Monitoring brain injury with microelectrode biosensors
- Dr. Stéphane Marinesco, Team TIGER, Lyon Neuroscience Research Center, CNRS, France
- In-person at IChF Aula
- Zobacz więcej
Monitoring brain injury with microelectrode biosensors
- Data: 20 października 2022, 11:00
- Prelegent: Dr. Stéphane Marinesco, Team TIGER, Lyon Neuroscience Research Center, CNRS, France
- Instytucja: In-person at IChF Aula
- Miejsce:
In-person at IChF Aula
- Osoba kontaktowa:
Piyush Sindhu Sharma, PhD, hab.
Group Leader
Functional Polymers
Institute of Physical Chemistry, PAS
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19 października 2022
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Surface functionalization via femtosecond laser induced periodic surface structures (FS-LIPSS): An approach with wide applications from metallurgy to modern photonic instruments
- Dr. Sepehr Razi, Urmia University of Technology, Iran
- ON-LINE
- Zobacz więcej
Surface functionalization via femtosecond laser induced periodic surface structures (FS-LIPSS): An approach with wide applications from metallurgy to modern photonic instruments
- Data: 19 października 2022, 10:15
- Prelegent: Dr. Sepehr Razi, Urmia University of Technology, Iran
- Instytucja: ON-LINE
- Miejsce:
Zoom link
Meeting ID: 923 9041 0227
Passcode: 529643
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19 października 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 19 października 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, October 12, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, no password.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Shreyas Vasantham, M. Sc.
‘Single-cell Stakeout: (optohydrodynamic) Force Awakens'
Maria Celeste Tirelli, M. Sc.
’3D printing of functionally graded porous materials’
This session will be chaired jointly by the PhD students Francesco Nalin and Jonathan Pullas Navarrete.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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12 października 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 12 października 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday, October 12, from 2 PM to approx. 3 PM.
Meeting ID: 505-434-0400, no password.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Francesco Nalin, M. Sc.
‘Dynamic step-emulsification for the generation of functionally graded porous materials'
Jonathan Pullas Navarrete, M. Sc.
’Microfluidic assisted printing of self-assembling double emulsion droplets arrays’
This session will be chaired jointly by the PhD students Adam Trzaska and Anna Galińska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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6 października 2022
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Understanding biological roles of glycans via chemical sensing and gas phase analysis
- Dr Mateusz Mariański, Hunter College, City University of New York
- Institute of Physical Chemistry, Polish Academy of Sciences
- Zobacz więcej
Understanding biological roles of glycans via chemical sensing and gas phase analysis
- Data: 6 października 2022, 10:00
- Prelegent: Dr Mateusz Mariański, Hunter College, City University of New York
- Instytucja: Institute of Physical Chemistry, Polish Academy of Sciences
- Miejsce:
In-person, 2h seminar in IChF Aula.
The event is thought as an in-person seminar, but a stream will be provided for those who cannot attend it. Zoom connection details are as follows:
Link: https://zoom.us/j/94864243306?pwd=TUhUSFlsQUdQRFF3OFN1Z1ppQlljdz09
Meeting ID: 948 6424 3306
Password: 347293
- Abstrakt:
Interactions that occur on the cell surface have a central role in regulating many important biological processes, including, immune response, cell-cell communication, disease progression, and cell‒pathogen interactions. These processes are mediated by cell-surface glycoproteins, glycolipids, and glycopolymers, and glycans expressed in the glycocalyx are unique identifiers of cell type that can indicate disease and could serve as drug targets. For many diseases and infections, there is still a need for effective treatments that halt their progression, and molecules that can bind the glycans could be used for early detection of the disease biomarkers or as drug delivery agents, as anticancer and antiviral treatments. These needs, however, require understanding of the chemical underpinning of the protein-glycan recognition, as well as efficient and detailed methods of structural analysis of glycans.
In the first part of the lecture, I will summarize role of glycans in diseases and viral infections, and discuss the challenge associated with the design of therapeutics targeting surface glycans. Next, I will discuss the basics of chemical recognition of glycans using covalent binding, metal-assisted binding, and noncovalent interactions. Finally, I will introduce the idea of flexible synthetic carbohydrate receptors, which include cooperativity and multivalency in their binding mode, as a design that could lead to development of novel sensing devices and unlock new glycan targets for future therapeutics.
In the second part of the lecture, I will discuss recent advances in gas-phase glycoanalytics. In principle, the development of the glycomics has been hampered by the lack of both high-resolution and high-throuhtput methods to able to isolate and deduce a glycan structure. Herein, I will focus in recent developments in liquid chromatography, mass spectrometry, ion-mobility spectrometry and cryo IR spectroscopy in the context of the glycan analysis, discussing the strengths and limitations of these methods. While each of these methods has its own merits, the combination of the techniques provides a multidimensional reference library that could be used for seamless identification of complex glycans. Finally, I touch on the role of the computational chemistry in glycoanalysis, and its synergy with the gas-phase glycoanalysis.
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14 lipca 2022
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Towards high-resolution functional two-photon imaging in the living human eye – Lessons learned from non-human primate
- Christina Schwarz, PhD. Institute for Ophthalmic Research at the University of Tübingen, Germany
- Joint seminar of ICTER & Department I
- Zobacz więcej
Towards high-resolution functional two-photon imaging in the living human eye – Lessons learned from non-human primate
- Data: 14 lipca 2022, 16:30
- Prelegent: Christina Schwarz, PhD. Institute for Ophthalmic Research at the University of Tübingen, Germany
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
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1 lipca 2022
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Proteases as medical target in bioimaging and drug development
- Prof. dr hab. Marcin Drąg, Division of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology
- Dream Chemistry Lecture: Mentors
- Zobacz więcej
Proteases as medical target in bioimaging and drug development
- Data: 1 lipca 2022, 13:00
- Prelegent: Prof. dr hab. Marcin Drąg, Division of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology
- Instytucja: Dream Chemistry Lecture: Mentors
- Miejsce:
Assembly hall, on-site seminar
- Abstrakt:
Diseases such as cancer, diabetes or viral and bacterial infections are one of the main causes of human mortality, regardless of age and origin. Perfect methods of treatment have still not been found. Much hope is placed on research into the origin of a disease, usually involving tens or hundreds of biological macromolecules called enzymes. From this point of view, one of the most important groups of enzymes are proteases, the increased or decreased level of which allows for rapid clinical diagnosis using specific markers, and also gives the opportunity for rational, rapid research on drug discovery based on protease activity. An excellent reason for research on proteases are commercially available anti-cancer, anti-diabetic and anti-viral HIV drugs that rely on the inhibition of protease activity. Unfortunately, these drugs can only be used for a limited number of diseases, and many other proteases (around 650 proteases have been described in humans to date) involved in various disorders in humans and other living organisms require further research.
Proteases are key players in the development of viral diseases. Recent studies show that proteases operate in a network that involves the activity of many different proteolytic enzymes at the same time. Given the fact that more and more proteases are actively involved in viral diseases, there is an urgent need to develop new chemical tools that, thanks to the activity of enzymes, can be used for their precise monitoring or the search for drug candidates. Moreover, in order to detect the active form of the protease, one should use chemical tools called activity-based probes. The lecture will present modern techniques of creating tools for the study of viral proteases.
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
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30 czerwca 2022
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Merging sonication, heterogeneous photocatalysis and flow chemistry: Environmental and Energy Applications
- Dr hab. inż. Juan Carlos Colmenares Quintero, profesor instytutu
- Next Door Research Seminar
- Zobacz więcej
Merging sonication, heterogeneous photocatalysis and flow chemistry: Environmental and Energy Applications
- Data: 30 czerwca 2022, 10:00 a.m.
- Prelegent: Dr hab. inż. Juan Carlos Colmenares Quintero, profesor instytutu
- Instytucja: Next Door Research Seminar
- Miejsce:
Meeting ID: 987 3530 6469
Passcode: 263941
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21 czerwca 2022
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Stability of gene expression patterns in developmental systems with dynamic morphogen sources
- Maciej Majka, PhD, Theory of Complex Systems Department, Institute of Theoretical Physics, Jagiellonian University Krakow, Poland
- Biophysical Chemistry Group (Z31) seminar
- Zobacz więcej
Stability of gene expression patterns in developmental systems with dynamic morphogen sources
- Data: 21 czerwca 2022, 12:00
- Prelegent: Maciej Majka, PhD, Theory of Complex Systems Department, Institute of Theoretical Physics, Jagiellonian University Krakow, Poland
- Instytucja: Biophysical Chemistry Group (Z31) seminar
- Miejsce:
Zoom link
Meeting ID: 232 698 3917
- Osoba kontaktowa:
Anna Ochab-Marcinek, PhD (dr hab.)
Biophysical Chemistry Group
- Abstrakt:
In developmental systems, cells determine their fate by decoding chemical signals, called morphogens. This leads to the emergence of gene expression patterns, whose dynamics is still not fully understood. In this presentation I will address the problem of gene expression patterns stability in the systems where two diffusible morphogens affect each other’s production and control the growth of their own source regions. Such systems are encountered in e.g. spinal cord development, limb formation and many others. The reaction-diffusion equation with the bi-stable production term is employed as a generic model for this problem. It is found that its dynamics is governed by the conservation law, which leads to a range of analytical results. In particular, the phase transition is observed, between the phase of indeterminate patterning, where region of mixed gene expression is ever-growing, and the phase of travelling gene expression patterns, where two expression domains form and preserve a well-defined contact zone. A sub-class of genuinely stationary patterns is then identified, alongside the exact conditions ensuring this stability. These results allow me to classify the ability of various two-gene regulatory motifs to produce stable gene expression patterns.
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15 czerwca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 15 czerwca 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Adam Trzaska, M. Sc.
‘Mechanochemistry as efficient and green approach for Metal-Organic Frameworks'
Anna Galińska, M. Sc.
’Optimization of the signal transduction in the retina after vision recovery using newly cloned cation channels’
Agnieszka Lewalska-Graczyk, M. Sc.
‘Ambiguities in graphitic carbon nitride structure’
This session will be chaired jointly by the PhD students Adam Kowalski and Katarzyna Dusiło.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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9 czerwca 2022
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How much information can one extract from noise when imaging the cornea with OCT?
- Robert Iskander, PhD. Department of Biomedical Engineering at the Faculty of Fundamental Problems of Technology, Wroclaw University of Science and Technology.
- International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
How much information can one extract from noise when imaging the cornea with OCT?
- Data: 9 czerwca 2022, 16:30 CEST
- Prelegent: Robert Iskander, PhD. Department of Biomedical Engineering at the Faculty of Fundamental Problems of Technology, Wroclaw University of Science and Technology.
- Instytucja: International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Miejsce:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
OCT speckle is known to carry information about the sample structure. The lecture focuses on recent developments in imaging corneal tissue, covering the opportunities and limitations of OCT technology for indirectly extracting corneal microstructure.
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8 czerwca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 8 czerwca 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Adam Kowalski, M. Sc.
‘High throughput microfluidic system for fast determination of the equilibrium constant for biomolecular complexes: Application to RNA-DNA interactions'
Katarzyna Dusiło, M. Sc.
‘Generation of hydrogen peroxide at liquid-liquid interface’
This session will be chaired jointly by the PhD students Samaneh Shahab and Andrzej Krześniak.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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26 maja 2022
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Measurements of two-photon vision
- Dr Grzegorz Łabuz, Heidelberg University, Germany
- Joint seminar of ICTER & Department I
- Zobacz więcej
Measurements of two-photon vision
- Data: 26 maja 2022, 16:30
- Prelegent: Dr Grzegorz Łabuz, Heidelberg University, Germany
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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25 maja 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 25 maja 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Andrzej Krześniak, M. Sc.
‘Electrochemical studies of enzymatic reactions in a microfluidic channel'
Wojciech Mazurkiewicz, M. Sc.
‘Challenges of simultaneous neurotransmitter sensing’
This session will be chaired jointly by the PhD students Enkhlin Ochirbat and Dominik Korol.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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25 maja 2022
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Truxene or hetrotruxene - playing with heteroatoms
- Dr Justyna Mech-Piskorz
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Truxene or hetrotruxene - playing with heteroatoms
- Data: 25 maja 2022, 10:00
- Prelegent: Dr Justyna Mech-Piskorz
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 996 2118 1322
Passcode: 894335
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19 maja 2022
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Multimodal OCT Imaging and Raman Spectroscopy for the Human Eye
- Prof. Rainer Leitgeb, Medical University Vienna
- International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Multimodal OCT Imaging and Raman Spectroscopy for the Human Eye
- Data: 19 maja 2022, 16:30 CEST
- Prelegent: Prof. Rainer Leitgeb, Medical University Vienna
- Instytucja: International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Despite the vast clinical acceptance of optical coherence tomography (OCT) in visualizing the structure and vasculature system (angiography) of the retina, the method is still lacking the capability to provide molecular fingerprints of retinal tissue. The assessment of biochemical changes would critically enhance the early disease diagnostics when treatment is most effective. In recent years Raman spectroscopy (RS) has been recognized as an extremely powerful tool for bioanalytical and biomedical applications because the method provides molecular fingerprint information of the molecular structure and biochemical composition of cells and tissues without external markers. Diseases and other pathological anomalies are accompanied by changes in these properties. However, the application of spontaneous RS under in vivo conditions is extremely challenging due to the delicate nature of the eyes. The presentation will review different approaches for ocular RS and focus on the first reported spontaneous RS fingerprint spectra of the human retina in-vivo.
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18 maja 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 18 maja 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Enkhlin Ochirbat, M. Sc.
‘Development of a comprehensive bacteria detection procedure: The creation of a sensor and development of new protocols for sample preparation and deposition'
Dominik Korol, M. Sc.
‘Microspheres in the preparation of molecularly imprinted polymers for chemosensing’
Samaneh Shahab, M. Sc.
‘Sub-ps Raman study of vibrational energy relaxation in alcohols’
This session will be chaired jointly by the PhD students Joanna Celej and Aziz Ariba.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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12 maja 2022
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How human single-neuron recordings can help us understand memory?
- Dr Jan Kamiński, Nencki Institute of Experimental Biology, Warsaw
- Joint seminar of ICTER & Department I
- Zobacz więcej
How human single-neuron recordings can help us understand memory?
- Data: 12 maja 2022, 16:30
- Prelegent: Dr Jan Kamiński, Nencki Institute of Experimental Biology, Warsaw
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Long-Term Memory (LTM) and Working memory (WM) interact closely, but the neuronal basis of this interaction remains poorly understood. In our previous research we discovered that stimulus-selective persistent activity of Medial Temporal Lobe (MTL) neurons supports WM maintenance. As MTL is crucial for forming new memories this persistent activity could play an important role also in LTM encoding. Indeed, the strength of the stimulus-selective activity during WM maintenance predicts whether an item is subsequently remembered in the later LTM recognition task. These results show that selective neuronal activity during WM maintenance acts as a common neural substrate for both WM maintenance and LTM formation.
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11 maja 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 11 maja 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Katarzyna Dusiło, M. Sc.
‘Generation of hydrogen at liquid-liquid interface”
Joanna Celej, M. Sc.
‘Imaging of bacteria, bacteriophages, and their interaction’
Aziz Ariba, M. Sc.
‘Catalysis at nanoscale: Localization of active sites at nanostructured materials and surfaces modified with enzymes’
This session will be chaired jointly by the PhD students A. Wróblewska, K. Kravets, and J. Kruszyńska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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11 maja 2022
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Solids Hard to Measure
- Dr hab. Gonzalo Angulo, prof. IChF
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Solids Hard to Measure
- Data: 11 maja 2022, 10:00 AM
- Prelegent: Dr hab. Gonzalo Angulo, prof. IChF
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 977 1661 8602
Passcode: 127968
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6 maja 2022
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Chemistry in the World of Physics. How to Unify the Knowledge and Get Efficient OLEDs
- Prof. Przemysław Data
- Department of Physical Chemistry and Technology of Polymers, Silesian University of Technology, Gliwice, Poland
- Zobacz więcej
Chemistry in the World of Physics. How to Unify the Knowledge and Get Efficient OLEDs
- Data: 6 maja 2022, 12:00 PM
- Prelegent: Prof. Przemysław Data
- Instytucja: Department of Physical Chemistry and Technology of Polymers, Silesian University of Technology, Gliwice, Poland
- Miejsce:
link to join zoom seminar:
https://zoom.us/j/96668972048?pwd=bjZmbGZpUnIxWjJHbUFJY2xBSmR1Zz09
Meeting ID: 966 6897 2048
Passcode: 130819
- Abstrakt:
The discovery of electroluminescence of organic molecules is one of the ground-breaking and promising breakthroughs in the last century. Owing to it and to the progress in the field of organic electronics over the last half-century, nowadays, we are surrounded by organic light-emitting diodes (OLEDs) products. In addition to lightness, flexibility, and low production cost, the major advantage of using organic emitters for OLEDs is the possibility to tailor their properties by designing and modifying their molecular structures. From the viewpoint of emission mechanisms, there are two types of emitters: fluorescence and phosphorescence emitters. Fluorescence emitters are the first generation of electroluminescence emitters for OLEDs, but they are fatally restricted by the upper limit of internal quantum efficiency (IQE) of 25%, due to spin-statistics. The second-generation emitter, phosphorescence emitters, are more efficient and for this reason, are commonly used in OLED-based displays. However, nothing is perfect: phosphorescence emitters that are currently used in organic electronics are organometallic complexes comprising of very expensive and rare heavy metals such as Ir and Pt. To overcome this problem, the search for all-organic TADF (Thermally Activated Delayed Fluorescence) emitters is conducted.
Herein I present a new approach to the design of metal-free organic thermally activated delayed fluorescence emitters for organic light-emitting diodes. I present different aspects of modification of molecule structure in order to increase efficiency. Even by simple electrochemical modification, it’s possible to change the energy levels in order to decrease the singlet-triplet energy gap. The subtle tunning of the energy difference between the singlet and triplet excited states allows for tailored emission properties of thermally activated delayed fluorescence and its efficiency. Finally, depending on the molecule and its host environment interaction, we may change the emission and increase efficiency. All presented steps will give an insight into broad possibilities of tailoring OLED emitters.
The event is obligatory to all doctoral students, and of interest, I hope, to the whole IChF community.
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5 maja 2022
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Advances in Optical Coherence Tomography
- Prof. Adrian Podoleanu, University of Kent, Canterbury
- Joint seminar of ICTER & Department I
- Zobacz więcej
Advances in Optical Coherence Tomography
- Data: 5 maja 2022, 16:30
- Prelegent: Prof. Adrian Podoleanu, University of Kent, Canterbury
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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28 kwietnia 2022
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Development of strategies for improving stability of perovskite solar cells
- Dr hab. Daniel Prochowicz, profesor instytutu
- Next Door Research
- Zobacz więcej
Development of strategies for improving stability of perovskite solar cells
- Data: 28 kwietnia 2022, 10:00 AM
- Prelegent: Dr hab. Daniel Prochowicz, profesor instytutu
- Instytucja: Next Door Research
- Miejsce:
Meeting ID: 987 3530 6469
Passcode: 263941
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28 kwietnia 2022
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Sano Centre for Computational Medicine: towards synergy of modelling and data analysis
- Marian Bubak, PhD
- International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Sano Centre for Computational Medicine: towards synergy of modelling and data analysis
- Data: 28 kwietnia 2022, 16:30 CEST
- Prelegent: Marian Bubak, PhD
- Instytucja: International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar:
ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
To provide more personalized treatment, human physiology models are becoming more and more complex and the amount of data is increasing considerably, therefore, advanced methods of modelling and data analysis are necessary.
Since 2000 DICE Team (http://dice.cyfronet.pl/) has been involved in the research focused on problem-solving environments and decision support systems on distributed computing infrastructures for medicine. The main partners were the University of Sheffield, University of Amsterdam, Juelich Supercomputing Centre, LMU and Leibniz Supercomputing Centre in Munich. As a result of successful scientific collaboration a new scientific unit: Sano Centre for Computational Personalized Medicine – International Research Foundation was established in 2019, in Krakow (https://sano.science/).
Sano Centre is a new non-profit, autonomic research institute dedicated to advancement of computational medicine, development of computer methods for the prevention, diagnosis and treatment of disease, meet the worldwide need for efficient, effective and streamlined healthcare.
Six Sano research teams cover such in-silico medicine areas as modelling and simulation, data science, artificial intelligence and machine learning methods, image processing, IT methods in medicine, large-scale computing, and decision-making support systems. This research will result in the development of tools supporting doctors in diagnostic and treatment processes. It is extremely valuable from the point of view of an individual patient and will reduce the costs of treatments. Modern computer technologies developed in Sano may also be used in pharmaceutical and biotechnology laboratories.
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27 kwietnia 2022
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Triplet photosensitizers derived from rigid organoboron structures: from molecular design to applications
- Dr eng. Krzysztof Durka, Warsaw University of Technology
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Triplet photosensitizers derived from rigid organoboron structures: from molecular design to applications
- Data: 27 kwietnia 2022, 10:00 AM
- Prelegent: Dr eng. Krzysztof Durka, Warsaw University of Technology
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 968 1748 5278
Passcode: 067275
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27 kwietnia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 27 kwietnia 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Kateryna Kravets, M. Sc.
‘Host-guest crystals with a flexible structure”
Joanna Kruszyńska, M. Sc.
‘Impact of aluminum-doped zinc oxide films on the stability of perovskite films and solar cells’
This session will be chaired jointly by the PhD students B. Bałamut and J. Maciejewska-Komorowska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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21 kwietnia 2022
-
Structural Insights for the Regulation of Retinal Guanylate Cyclase by GCAP1 and RD3
- Prof. James B. Ames, Department of Chemistry, University of California, Davis, CA
- Joint seminar of ICTER & Department I
- Zobacz więcej
Structural Insights for the Regulation of Retinal Guanylate Cyclase by GCAP1 and RD3
- Data: 21 kwietnia 2022, 17:30 CEST
- Prelegent: Prof. James B. Ames, Department of Chemistry, University of California, Davis, CA
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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20 kwietnia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 20 kwietnia 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Bartłomiej Bałamut, M. Sc.
‘Targeting motion selective network in retina using viruses”
Julia Maciejewska-Komorowska, M. Sc.
‘Electrochemical paper systems - preparation and applications’
Aleksandra Wróblewska, M. Sc.
‘Catch me if you can’
This session will be chaired jointly by the PhD students Cassia Corso Silva, Mateusz Pielach, and Karolina Zielonka.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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14 kwietnia 2022
-
Order, complexity and information in physico-chemical systems
- Prof. dr hab. Jerzy Górecki
- Institute of Physical Chemistry, Polish Academy of Sciences
- Zobacz więcej
Order, complexity and information in physico-chemical systems
- Data: 14 kwietnia 2022, 10:00 AM
- Prelegent: Prof. dr hab. Jerzy Górecki
- Instytucja: Institute of Physical Chemistry, Polish Academy of Sciences
- Miejsce:
Meeting ID: 987 3530 6469
Passcode: 263941
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14 kwietnia 2022
-
Medical applications of Machine Learning
- Piotr Graszka, PhD. PhD in Image Processing, Warsaw University of Technology
- International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Medical applications of Machine Learning
- Data: 14 kwietnia 2022, 16:30
- Prelegent: Piotr Graszka, PhD. PhD in Image Processing, Warsaw University of Technology
- Instytucja: International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Miejsce:
Register in advance for this webinar: ZOOM link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Classic data analysis and Computer Vision techniques have been successfully used in various medical applications for many years. However, currently solutions to problems encountered in numerous areas are evolving towards Machine Learning aided approaches. Medicine, and along with it Medical Imaging, is no different in this matter as in the last couple of years Machine Learning (and especially Deep Learning) proved to be capable of providing completely new standards of quality and accuracy of automated detection, classification and analysis of various types of data. This presentation is a survey of possibilities that could be opened through the usage of Machine Learning in the field of Medicine.
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13 kwietnia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 13 kwietnia 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Cassia Corso Silva, M. Sc.
‘Fiber laser for Stimulated Raman Scattering imaging’
Mateusz Pielach, M. Sc.
‘Ultrafast all-polarization-maintaining dispersion-managed Yb-doped fiber laser oscillator’
This session will be chaired jointly by the PhD students Abdolvahab Amirsalari and Patryk Pyrcz.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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7 kwietnia 2022
-
Leukocytes, adhesion molecules and vascular damage in early diabetic retinopathy.
- Dr Emma Lessieur, University of California-Irvine, USA
- Joint seminar of ICTER & Department I
- Zobacz więcej
Leukocytes, adhesion molecules and vascular damage in early diabetic retinopathy.
- Data: 7 kwietnia 2022, 16:30
- Prelegent: Dr Emma Lessieur, University of California-Irvine, USA
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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6 kwietnia 2022
-
Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 6 kwietnia 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Abdolvahab Amirsalari, M. Sc.
‘Single-particle dark-field and SERS spectroscopies of nanorod antenna’
Patryk Pyrcz, M. Sc.
‘Influence of the energy of the plasmon resonances on the intensity and line shape of the SE-FSRS spectra’
Karolina Zielonka, M. Sc.
‘Graphene/hexagonal boron nitride heterostructures in single-molecule studies’
This session will be chaired jointly by the PhD students D. Kornacki, E. Ganesan, and M. Ćwik.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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6 kwietnia 2022
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Sulfur Monoxide: The Interstellar Chemistry and Beyond
- Prof. Xiaoqing Zeng, Department of Chemistry, Fudan University, China
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Sulfur Monoxide: The Interstellar Chemistry and Beyond
- Data: 6 kwietnia 2022, 10:00 AM
- Prelegent: Prof. Xiaoqing Zeng, Department of Chemistry, Fudan University, China
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 918 3341 5019
Passcode: 701868
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31 marca 2022
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In vivo imaging of the human eye using a two-photon-excited fluorescence scanning laser ophthalmoscope
- Dr Jakub Bogusławski, Wrocław University of Science and Technology and ICTER IChF
- Joint seminar of ICTER & Department I
- Zobacz więcej
In vivo imaging of the human eye using a two-photon-excited fluorescence scanning laser ophthalmoscope
- Data: 31 marca 2022, 16:30
- Prelegent: Dr Jakub Bogusławski, Wrocław University of Science and Technology and ICTER IChF
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
- Abstrakt:
Noninvasive assessment of metabolic processes that sustain regeneration of human retinal visual pigments (visual cycle) is essential to improve ophthalmic diagnostics and to accelerate development of new treatments to counter retinal diseases. Fluorescent vitamin A derivatives, which are the chemical intermediates of these processes, are highly sensitive to UV light; thus, safe analyses of these processes in humans are currently beyond the reach of even the most modern ocular imaging modalities. We present a compact, two-photon-excited fluorescence scanning laser ophthalmoscope and spectrally resolved images of the human retina based on two-photon excitation (TPE) with near-infrared light. A custom Er:fiber laser with integrated pulse selection, along with intelligent postprocessing of data, enabled excitation with low laser power and precise measurement of weak signals. Our work establishes a TPE instrument and measurement method for noninvasive imaging of the human retina. This approach opens new possibilities for monitoring eye diseases in the earliest stages.
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30 marca 2022
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The Interstellar Chemistry and Beyond
- Prof. Xiaoqing Zeng, Department of Chemistry, Fudan University, China
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
The Interstellar Chemistry and Beyond
- Data: 30 marca 2022, 10:00 AM
- Prelegent: Prof. Xiaoqing Zeng, Department of Chemistry, Fudan University, China
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 918 5816 9402
Passcode: 640254
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30 marca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 30 marca 2022, from 2 PM to approx. 3 PM
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Elavenil Ganesan, M. Sc.
‘A peculiar CP radical phosphorescence’
Michał Ćwik, M. Sc.
‘PCP fluorescence enhancement by silver nanowires’
This session will be chaired jointly by the PhD students Aleksandra Borkenhagen and Karolina Opała.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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24 marca 2022
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Parallel interferometric near-infrared spectroscopy
- Dr Dawid Borycki, IChF
- Joint seminar of ICTER & Department I
- Zobacz więcej
Parallel interferometric near-infrared spectroscopy
- Data: 24 marca 2022, 16:30
- Prelegent: Dr Dawid Borycki, IChF
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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23 marca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 23 marca 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Aleksandra Borkenhagen, M. Sc.
‘Ligand exchange and switching from hydrophobic to water-stable hydrophilic zinc oxide nanocrystals by mechanochemical approach’
Karolina Opała, M. Sc.
‘The many faces of DMA-based perovskites: Temperature-dependent phase transitions’
Dawid Kornacki, M. Sc.
‘Mechanochemical vs. wet approach for directing the CO2 capture towards various carbonate and bicarbonate networks’
This session will be chaired jointly by the PhD students Rafał Zbonikowski, Sada Raza, and Sakshi Sareen.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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17 marca 2022
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Photochemistry and spectroscopy of certain astro-relevant molecules
- Prof. dr hab. Robert Kołos
- Institute of Physical Chemistry, Polish Academy of Sciences
- Zobacz więcej
Photochemistry and spectroscopy of certain astro-relevant molecules
- Data: 17 marca 2022, 10:00 AM
- Prelegent: Prof. dr hab. Robert Kołos
- Instytucja: Institute of Physical Chemistry, Polish Academy of Sciences
- Miejsce:
Meeting ID: 987 3530 6469
Passcode: 263941
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17 marca 2022
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Neuronal responses to light in the hypothalamic suprachiasmatic nuclei (SCN) - comparison between day- and night-active species.
- Dr Patrycja Orłowska-Feuer, Jagiellonian University
- Joint seminar of ICTER & Department I
- Zobacz więcej
Neuronal responses to light in the hypothalamic suprachiasmatic nuclei (SCN) - comparison between day- and night-active species.
- Data: 17 marca 2022, 16:30
- Prelegent: Dr Patrycja Orłowska-Feuer, Jagiellonian University
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
Zoom link
Meeting ID: 946 0989 6336
Passcode: 633683
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16 marca 2022
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Distinguishing Enantiomers by Tip-Enhanced Raman Scattering: Chemically Modified Silver Tip with an Asymmetric Atomic Arrangement
- Dr Thanyada Sukmanee
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Distinguishing Enantiomers by Tip-Enhanced Raman Scattering: Chemically Modified Silver Tip with an Asymmetric Atomic Arrangement
- Data: 16 marca 2022, 10:00 AM
- Prelegent: Dr Thanyada Sukmanee
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 948 0008 1193
Passcode: 511000
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16 marca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 16 marca 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Rafał Zbonikowski, M. Sc.
‘Langmuir films composed of stimuli-responsive nanoparticles decorated with poly(N-isopropyl acrylamide) (PNIPAM)’
Sada Raza, M. Sc.
‘Inactivation of Bacteriophages: An Overview’
Sakshi Sareen, M. Sc.
‘Fluorescent ATP sensors ’
This session will be chaired jointly by the PhD students Alicja Kijewska, Joanna Materska, and Mateusz Wdowiak.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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9 marca 2022
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Surface-enhanced Raman Spectroscopy and its Applications
- Dr Om Prakash
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Surface-enhanced Raman Spectroscopy and its Applications
- Data: 9 marca 2022, 10:00 AM
- Prelegent: Dr Om Prakash
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 961 9685 5559
Passcode: 568846
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9 marca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 9 marca 2022, from 2 PM to approx. 3 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Joanna Materska, M. Sc.
‘Two component system of growing and motile active matter in computer simulations’
Mateusz Wdowiak, M. Sc.
‘Bacteriophage protection from the ultraviolet radiation’
This session will be chaired jointly by the PhD students Karolina Kucharska and Aneta Karpińska.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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3 marca 2022
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The bridging transition - Academia to Industry
- Dr Krzysztof Herdzik, Senior Optical Engineer
- Joint seminar of ICTER & Department I
- Zobacz więcej
The bridging transition - Academia to Industry
- Data: 3 marca 2022, 16:30
- Prelegent: Dr Krzysztof Herdzik, Senior Optical Engineer
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
ZOOM webinar registration link
Meeting ID: 946 0989 6336
Passcode: 633683
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2 marca 2022
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Direct Chemical Vapor Deposition of 2D material on Dielectric substrate and Applications
- Dr Manish Priydarshi
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Direct Chemical Vapor Deposition of 2D material on Dielectric substrate and Applications
- Data: 2 marca 2022, 10:00 AM
- Prelegent: Dr Manish Priydarshi
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Zoom link
Meeting ID: 926 1770 1723
Passcode: 154070
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2 marca 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 2 marca 2022, from 2 PM to approx. 3:30 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Karolina Kucharska, M. Sc.
‘The fate of YO-PRO, impermeant cyanine dye staining double-stranded DNA, in HeLa cells’
Aneta Karpińska, M. Sc.
‘Cellular delivery by osmotic shock – the issue of polymers entanglement’
Alicja Kijewska, M. Sc.
‘Why intracellular transport is faster during apoptosis of HeLa cells’
This session will be chaired jointly by the PhD students Elżbieta Jarosińska, Bartosz Zawadzki, and James Lawrence Pogrebetsky.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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24 lutego 2022
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Electrochemistry at soft interfaces, nanoobjects, cavities...
- Prof. dr hab. Marcin Opałło
- Next Door Research Seminar Series
- Zobacz więcej
Electrochemistry at soft interfaces, nanoobjects, cavities...
- Data: 24 lutego 2022, 10:00 AM
- Prelegent: Prof. dr hab. Marcin Opałło
- Instytucja: Next Door Research Seminar Series
- Miejsce:
ZOOM LINK
Meeting ID: 987 3530 6469
Passcode: 263941
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24 lutego 2022
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In vivo imaging of the human eye using a two-photon-excited fluorescence scanning laser ophthalmoscope
- Dr Jakub Bogusławski, ICTER & Wrocław University of Science and Technology
- Joint seminar of ICTER & Department I
- Zobacz więcej
In vivo imaging of the human eye using a two-photon-excited fluorescence scanning laser ophthalmoscope
- Data: 24 lutego 2022, 16:30
- Prelegent: Dr Jakub Bogusławski, ICTER & Wrocław University of Science and Technology
- Instytucja: Joint seminar of ICTER & Department I
- Miejsce:
ZOOM webinar registration link
Meeting ID: 946 0989 6336
Passcode: 633683
SIP: 94609896336@zoomcrc.com
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23 lutego 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 23 lutego 2022, from 2 PM to approx. 4 PM.
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
1. Elżbieta Jarosińska, M. Sc.
‘Studying 3D cell culture in hydrogel scaffolds’
2. Bartosz Zawadzki, M. Sc.
‘Synthesis of pharmaceutical intermediates in flow catalytic hydrogenation processes’
3. James Lawrence Pogrebetsky, M. Sc.
‘A novel MP2-based extrapolation scheme for DLPNO-CCSD(T) method: towards canonical numbers at a fraction of computational cost. Part 2’
4. Basic information for the newly recruited students; questions & answers.
This session will be chaired jointly by the PhD students Tomasz Skóra, Swaraj Rashmi Pradhan, and Abdul Qayyum.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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17 lutego 2022
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Engineering Biology: Towards understanding and mitigating context-dependence
- Prof. Domitilla Del Vecchio, Department of Mechanical Engineering, Massachusetts Institute of Technology, USA
- Zobacz więcej
Engineering Biology: Towards understanding and mitigating context-dependence
- Data: 17 lutego 2022, 3:00 PM
- Prelegent: Prof. Domitilla Del Vecchio, Department of Mechanical Engineering, Massachusetts Institute of Technology, USA
- Miejsce:
Zoom link
Meeting ID: 963 6692 1063
Passcode: 312569
- Abstrakt:
Engineering biology holds tremendous potential to revolutionize several applications from environment, to energy, to health. Living cells can be equipped with gene-based circuits that accomplish a variety of functions, theoretically allowing us to program cells with de novo capabilities such as sensing environmental chemicals, releasing drugs, or producing materials, and artificially regulating endogenous molecules that dictate cell phenotype. A major challenge today, is the intricate dependence of genetic circuits’ functions on extra and intra-cellular context. For example, although we wish that the genetic circuits keep their functionality independent of whether we include other components in the cell, this is rarely the case. This issue complicates design and is a formidable obstacle to the practical use of engineered cells. In this talk, I will review some causes of context dependence, drawing examples from both bacterial and mammalian cells, and will introduce one approach based on control theory to mitigate it. I will conclude the talk with an overview of the limitations of current approaches and of unmet needs, which require more research.
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26 stycznia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 26 stycznia 2022, from 2 PM to approx. 3:30 PM
- Miejsce:
A weekly PhD seminar/webinar will be held via zoom on Wednesday.
Meeting ID: 505-434-0400.
- Osoba kontaktowa:
Robert Kołos
Head
Doctoral Studies, IPC PAS
- Abstrakt:
In the programme:
Tomasz Skóra, M. Sc.
‘Effects of macromolecular crowding on biologically-relevant equilibria. Divalent binding case’
Swaraj Rashmi Pradhan, M. Sc.
‘Nanoengineering of thin layers of semiconductor photocatalysts in a microreactor environment for lignin-based model compounds valorization’
Abdul Qayyum, M. Sc.
‘Key role of high frequency ultrasonication for the synthesis of nanostructured TiO2: Tuning the physicochemical features to elevate monoaromatic alcohol photocatalytic selective oxidation’
This session will be chaired jointly by the PhD students S. Devadas, I. Mbakara, and M. Biały.
Everybody is most welcome to attend (the Thesis Supervisors in particular!)
- Zobacz więcej
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20 stycznia 2022
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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
- Prof. Christoph Muus, Harvard University, School of Engineering and Applied Sciences; Broad Institute of MIT and Harvard: Cambridge, US
- International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Zobacz więcej
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
- Data: 20 stycznia 2022, 16:30 CET
- Prelegent: Prof. Christoph Muus, Harvard University, School of Engineering and Applied Sciences; Broad Institute of MIT and Harvard: Cambridge, US
- Instytucja: International Centre for Translational Eye Research & the Department of Physical Chemistry of Biological Systems
- Miejsce:
- Abstrakt:
Angiotensin-converting enzyme 2 (ACE2) and accessory proteases (TMPRSS2 and CTSL) are needed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cellular entry, and their expression may shed light on viral tropism and impact across the body. We assessed the cell-type-specific expression of ACE2, TMPRSS2 and CTSL across 107 single-cell RNA-sequencing studies from different tissues. ACE2, TMPRSS2 and CTSL are coexpressed in specific subsets of respiratory epithelial cells in the nasal passages, airways and alveoli, and in cells from other organs associated with coronavirus disease 2019 (COVID-19) transmission or pathology. We performed a meta-analysis of 31 lung single-cell RNA-sequencing studies with 1,320,896 cells from 377 nasal, airway and lung parenchyma samples from 228 individuals. This revealed cell-type-specific associations of age, sex and smoking with expression levels of ACE2, TMPRSS2 and CTSL. Expression of entry factors increased with age and in males, including in airway secretory cells and alveolar type 2 cells. Expression programs shared by ACE2+TMPRSS2+ cells in nasal, lung and gut tissues included genes that may mediate viral entry, key immune functions and epithelial–macrophage cross-talk, such as genes involved in the interleukin-6, interleukin-1, tumor necrosis factor and complement pathways. Cell-type-specific expression patterns may contribute to the pathogenesis of COVID-19, and our work highlights putative molecular pathways for therapeutic intervention.
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19 stycznia 2022
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Excitation wavelength dependence of the single-molecule surface-enhanced Raman scattering detectability.
- Amirsalari Abdolvahab, IChF
- Seminar of the Department of Photochemistry and Spectroscopy
- Zobacz więcej
Excitation wavelength dependence of the single-molecule surface-enhanced Raman scattering detectability.
- Data: 19 stycznia 2022, 10:00 AM
- Prelegent: Amirsalari Abdolvahab, IChF
- Instytucja: Seminar of the Department of Photochemistry and Spectroscopy
- Miejsce:
Meeting ID: 951 8377 4689
Passcode: 434373
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19 stycznia 2022
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Ph.D. Seminar
- Zobacz więcej
Ph.D. Seminar
- Data: 19 stycznia
- Zobacz więcej