Soft Granular Matter and Tissue Engineering

Research group no. 19

Soft Granular Matter and Tissue Engineering

Group leader

Research topics

In the group we study soft granular materials - in particular dense emulsions, foams and microhydrogels - for applications in fabrication of complex microcapsules and scaffolds for 3D cell culture. We use microfluidics to generate and control such structures. We develop new techniques of 3D printing using biomaterials, including printing of granular or porous structures, and techniques of 3D cell- and tissue culture in vitro.

Members

  • dr Michał Bogdan
  • dr Ronald Terrazas Mallea
  • dr Katarzyna Rojek
  • mgr Debjita Mukherjee
  • mgr Jonathan Pullas Navarrete
  • dr Iraj Alipourfard
  • mgr inż. Leon Jurkiewicz

Publications

2021

Idaszek, J., Volpi, M., Paradiso, A., Quoc, M. N., Górecka, Ż., Klak, M., Tymicki, G., Berman, A., Wierzbicki, M., Jaworski, S., Costantini, M., Kępczyńska, A., Chwalibóg, E. S., Wszoła, M., & Święszkowski, W.
Alginate-based tissue-specific bioinks for multi-material 3D-bioprinting of pancreatic islets and blood vessels: A step towards vascularized pancreas grafts.
Bioprinting, https://doi.org/10.1016/J.BPRINT.2021.E00163

Rinoldi, C., Zargarian, S. S., Nakielski, P., Li, X., Liguori, A., Petronella, F., Presutti, D., Wang, Q., Costantini, M., Sio, L. De, Gualandi, C., Ding, B., & Pierini, F.
Nanotechnology-Assisted RNA Delivery: From Nucleic Acid Therapeutics to COVID-19 Vaccines.
Small Methods, https://doi.org/10.1002/SMTD.202100402

Agarwal, T., Chiesa, I., Presutti, D., Irawan, V., Vajanthri, K. Y., Costantini, M., Nakagawa, Y., Tan, S. A., Makvandi, P., Zare, E. N., Sharifi, E., De Maria, C., Ikoma, T., & Maiti, T. K.
Recent advances in bioprinting technologies for engineering different cartilage-based tissues.
Materials Science and Engineering C, https://doi.org/10.1016/j.msec.2021.112005

Agarwal, T., Costantini, M., & Maiti, T. K.
Recent advances in tissue engineering and anticancer modalities with photosynthetic microorganisms as potent oxygen generators.
Biomedical Engineering Advances, 1, 100005. https://doi.org/10.1016/j.bea.2021.100005

Chirivì, M., Maiullari, F., Milan, M., Presutti, D., Cordiglieri, C., Crosti, M., Sarnicola, M. L., Soluri, A., Volpi, M., Święszkowski, W., Prati, D., Rizzi, M., Costantini, M., Seliktar, D., Parisi, C., Bearzi, C., & Rizzi, R.
Tumor Extracellular Matrix Stiffness Promptly Modulates the Phenotype and Gene Expression of Infiltrating T Lymphocytes.
International Journal of Molecular Sciences, https://doi.org/10.3390/ijms22115862

Celikkin, N., Presutti, D., Maiullari, F., Fornetti, E., Agarwal, T., Paradiso, A., Volpi, M., Święszkowski, W., Bearzi, C., Barbetta, A., Zhang, Y. S., Gargioli, C., Rizzi, R., & Costantini, M.
Tackling Current Biomedical Challenges With Frontier Biofabrication and Organ-On-A-Chip Technologies.
Frontiers in Bioengineering and Biotechnology, https://doi.org/10.3389/FBIOE.2021.732130

Agarwal, T., Costantini, M., & Maiti, T. K.
Extrusion 3D printing with Pectin-based ink formulations: Recent trends in tissue engineering and food manufacturing.
Biomedical Engineering Advances,  https://doi.org/10.1016/J.BEA.2021.100018

2022

Guzowski, J., Buda, R. J., Costantini, M., Ćwiklińska, M., Garstecki, P., & Stone, H. A.
From dynamic self-organization to avalanching instabilities in soft-granular threads.
Soft Matter, https://doi.org/10.1039/D1SM01350E

Bogdan, M., Montessori, A., Tiribocchi, A., Bonaccorso, F., Lauricella, M., Jurkiewicz, L., Succi, S., & Guzowski, J.
Stochastic Jetting and Dripping in Confined Soft Granular Flows.
Physical Review Letters,  https://doi.org/10.1103/PhysRevLett.128.128001

Lai, Y.-K., Opalski, A. S., Garstecki, P., Derzsi, L., & Guzowski, J.
A double-step emulsification device for direct generation of double emulsions.
Soft Matter. https://doi.org/10.1039/D2SM00327A

Durve, M., Tiribocchi, A., Bonaccorso, F., Montessori, A., Lauricella, M., Bogdan, M., Guzowski, J., & Succi, S.
DropTrack-Automatic droplet tracking with YOLOv5 and DeepSORT for microfluidic applications.
Phys. Fluids, https://doi.org/10.1063/5.0097597

Rojek, K. O., Ćwiklińska, M., Kuczak, J., & Guzowski, J.
Microfluidic Formulation of Topological Hydrogels for Microtissue Engineering.
Chemical Reviews, https://doi.org/10.1021/ACS.CHEMREV.1C00798

2023

Aghaei-Zarch Seyed Mohsen; Alipourfard Iraj; Rasoulzadeh Hassan; Najafi Sajad; Aghaei-Zarch Fatemehsadat; Partov Saber; Movafagh Abolfazl; Jahanara Abbas; Toolabi Ali; Sheikhmohammadi Amir; Pour Najme Nezamabadi; Neghad Sam Kharazi; Ashrafi-Asgarabad Ahad

Non-coding RNAs: An emerging player in particulate matter 2.5-mediated toxicity

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 2023 235 123790

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Valapil Karthika Kappalakandy; Filipiak Marcin Szymon; Rekiel Weronika; Jarosińska Elzbieta; Nogala Wojciech; Jonsson-Niedziółka Martin; Nery Emilia Witkowska         

Fabrication of ITO microelectrodes and electrode arrays using a low-cost CO2 laser plotter

LAB ON A CHIP  2023  23 17 3802-3810

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Hosseini Arianaz; Ashraf Hami; Rahimi Fatemeh; Alipourfard Iraj; Alivirdiloo Vahid; Hashemi Behnam; Yazdani Yalda; Ghazi Farhood; Eslami Majid; Reza Mahdieh Ameri Shah; Dadashpour Mehdi

Recent advances in the detection of glioblastoma from imaging-based methods to proteomics and biosensors: A narrative review

CANCER CELL INTERNATIONAL 2023 23 1 98

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Aslanian-kalkhoran Lida; Kamrani Amin; Alipourfard Iraj; Chakari-Khiavi Forough; Chakari-Khiavi Aref; Aghebati-Maleki Leili; Shekarchi Ali Akbar; Mehdizadeh Amir; Mojahedi Maryam; Danaii Shahla; Roshangar Leila; Heris Javad Ahmadian; Zolfaghari Mohammadali; Dolati Sanam; Soltani-Zangbar Mohammad Sadegh; Yousefi Mehdi  

The effect of lymphocyte immunotherapy (LIT) in modulating immune responses in patients with recurrent pregnancy loss (RPL)

INTERNATIONAL IMMUNOPHARMACOLOGY 2023 121 110326

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Fardi Fatemeh; Khasraghi Leila Bahari; Shahbakhti Negin; Naseriyan Amir Salami; Najafi Sajad; Sanaaee Saameh; Alipourfard Iraj; Zamany Marzieh; Karamipour Saman; Jahani Mehdi; Majidpoor Jamal; Kalhor Kambiz; Talebi Mehrdad; Aghaei-Zarch Seyed Mohsen    

An interplay between non-coding RNAs and gut microbiota in human health

DIABETES RESEARCH AND CLINICAL PRACTICE 2023 201 110739

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Czarnecka-Chrebelska Karolina H.; Mukherjee Debjita; Maryanchik Sofya V.; Rudzińska-Radecka Magdalena      

Biological and Genetic Mechanisms of COPD Its Diagnosis Treatment and Relationship with Lung Cancer

BIOMEDICINES 2023 11 2 448

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Shojaee Barjoee Saeed; Azizi Mohammad; Kouhkan Mosayeb; Alipourfard Iraj; Bayat Adeleh; Shahbaz Yones Heydari; Badieefar Amir; Latif Mohd Talib             

The Impacts and Analysis of Individual and Social Risks of the Stochastic Emission of Benzene from Floating-Roof Tanks Using Response Surface Analysis and MPACT Model

ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY  2023  84 3 347-367

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Alipourfard Iraj; Khorshidian Ayeh; Babakhanzadeh Emad; Nazari Majid

Susceptibility to azoospermia by haplotype analysis of protamine 1 and protamine 2 variants

HUMAN GENE 2023 37 201200